- Probe CUST_3552_PI390587928
- Source Contig U35_32469
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3552_PI390587928 | Hv_44K_v2 | GAAAAACAAAGGTATTTCTGAGAGCTGGACAATGGCTGATTTGGATGCACGGAGGCAGAA | 381 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.429 | 1.290 | 1.150 | 0.682 | 0.642 | 0.491 |
| Raw | 173.488 | 225.334 | 190.879 | 158.331 | 57.734 | 48.506 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354074 | 4533 | 9e-22 | 1668 - 1729 | 97 | 60 / 62 | plus | ABC13685 |
| MLOC | MLOC_37560.3 | 3141 | 9e-22 | 651 - 712 | 97 | 60 / 62 | plus | ABC13685 |
| MLOC | MLOC_37560.4 | 3371 | 9e-22 | 458 - 519 | 97 | 60 / 62 | plus | ABC13685 |
| MLOC | MLOC_37560.1 | 4030 | 9e-22 | 1138 - 1199 | 97 | 60 / 62 | plus | ABC13685 |
| MLOC | MLOC_37560.5 | 3118 | 9e-22 | 176 - 237 | 97 | 60 / 62 | plus | ABC13685 |
| MLOC | MLOC_37560.2 | 4055 | 9e-22 | 1118 - 1179 | 97 | 60 / 62 | plus | ABC13685 |
| JLOC1 | JLOC1_24326.2 | 4080 | 5e-22 | 1089 - 1150 | 97 | 60 / 62 | plus | |
| JLOC1 | JLOC1_24326.1 | 4095 | 5e-22 | 1089 - 1150 | 97 | 60 / 62 | plus | |
| Harvest35 | U35_32469 | 461 | 3e-25 | 382 - 441 | 100 | 60 / 60 | plus |
Contig Sequence (461 bp)
>U35_32469 461 Hv_44K_v2 CTAGTTTATTCCCTTCACTCCCTGAAGAACCATCAAAGTCTTCCAAATTTTCATCTATTG GGTCACGTTTTAAGCTGCAACTTCAGTCTCTCATGGAGACCTTGAGCTCTACTGAACCCC ATTATATTAGATGTGTGAAGCCAAATAATCTCCTCAAGCCAGCCATTTTTGAGAACACAA ACGTTATACAACAACTACGATGTGGAGGTGTTCTTGAAGCTATCAGGATAAGCTGTGCTG GATACCCCACAAGAAAAACATTCTATGAATTTGTTAATCGCTTTGGTGTTCTTGGCCCTG AACTTCTAGAAGGAAGTAACGACGATAAGATTGCATGCCAAAAGATTCTGGAAAAAATGA AGTTGGAGAACTACCAGATAGGAAAAACAAAGGTATTTCTGAGAGCTGGACAATGGCTGA TTTGGATGCACGGAGGCAGAAGTATAGGGAAAGCAGCAGAT
Homology of Contig U35_32469 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g48140.1 | 1558 | 5e-71 | protein|myosin, putative, expressed |
| Brachypodium v1_2 | Bradi2g41977.1 | 1530 | 1e-73 | |
| Arabidopsis v10 | AT5G20490.1 | 1545 | 6e-63 | | Symbols: XIK, ATXIK, XI-17 | Myosin family protein with Dil domain | chr5:6927064-6936825 REVERSE LENGTH=1545 |