barSeed - Barley Seed Development Database

Probe CUST_35525_PI390587928

Source Contig U35_14175

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35525_PI390587928	Hv_44K_v2	ATGTTGTATCTTGTTGAGTTCATTTCGACCCTACAACCAAATGCTCTGCTATTTTCTTAA	1611	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.583	1.562	1.224	0.833	0.190	0.158
Raw	289.638	446.197	302.056	331.742	27.294	23.578

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_49670.1	1992	5e-22	1895 - 1953	98	58 / 59	plus
Harvest35	U35_14175	1681	3e-25	1612 - 1671	100	60 / 60	plus

Contig Sequence (1681 bp)

>U35_14175 1681 Hv_44K_v2
CTACCGCTCACCCTCGCCCCCTCCTCCTCCTCATCCTCCACCACCACCGTCGTCGCACGA
CCGGACCGCCGGCGCCGCTGCCCCGCCCTCCCCACCCCGGTAGAAAATGGCTGACGCCGA
GGACATCCAGCCCCTCGTCTGCGACAATGGTACCGGTATGGTCAAGGCTGGGTTCGCTGG
AGATGATGCTCCCAGGGCTGTCTTCCCCAGTATCGTGGGCCGCCCACGCCACACCGGTGT
CATGGTCGGGATGGGGCAGAAGGACGCCTACGTCGGTGACGAGGCGCAGTCCAAGAGGGG
TATCTTGACTCTCAAGTACCCCATTGAGCACGGTATCGTCAGCAACTGGGACGATATGGA
GAAGATCTGGCATCACACCTTCTACAACGAGCTCCGTGTCGCCCCAGAGGAGCACCCCGT
CCTTCTCACTGAGGCGCCGCTCAACCCCAAGGCCAATCGTGAGAAGATGACCCAGATCAT
GTTCGAGACCTTCAACACTCCTGCTATGTATGTCGCCATCCAGGCCGTCCTCTCGCTGTA
TGCCAGTGGTCGTACCACAGGTATTGTGCTGGACTCGGGAGATGGTGTCAGCCACACTGT
CCCCATCTACGAAGGATACGCTCTTCCCCACGCTATCCTCCGTCTTGACCTGGCTGGGCG
TGATCTCACCGATTACCTCATGAAGATCCTCACTGAGCGTGGTTACTCATTCACCACCAC
TGCTGAGCGGGAAATTGTGAGGGATGTGAAGGAGAAGCTGTCCTACATTGCACTGGACTA
CGACCAGGAAATGGAGACTTCCAAGACCAGCTCTTCTGTGGAGAAGAGCTACGAGCTTCC
TGATGGGCAGGTTATCACCATTGGTTCCGAGCGTTTCCGTTGCCCTGAGGTCCTCTTCCA
GCCATCCTTCATCGGGATGGAAGCTGCAGGTATCCATGAGACCACCTACAACTCCATCAT
GAAGTGTGACGTGGATATTAGGAAGGATCTGTACGGCAACATTGTTCTTAGTGGTGGTAC
CACTATGTTCACTGGAATCGCTGATAGGATGAGCAAGGAGATCACTGCCTTGGCTCCTAG
CAGCATGAAGATTAAGGTTGTTGCTCCTCCTGAAAGGAAGTACAGTGTCTGGATCGGAGG
ATCCATCTTGGCATCTCTCAGCACCTTCCAGCAGATGTGGATTGCAAAGGCTGAGTACGA
CGAGTCTGGCCCATCCATCGTGCACAGGAAATGCTTCTAATTCTTCGGACCCAAGAATGA
AAGCCAGGAGGAGCCTTTATCGCGACCCTCCTGCCGCTTCGCCTCCCTCTTTTGTTGCTG
TTTCTTCGTTAGCGTGGACAAAGTTTTCGGCTGGCCTACCGGTTACCGTTTTCTCCTATT
CAAAGACTGTAATATCTATTGCTACTTGTGCTTGTCCCTCGTGATTTTGGACACATGAGT
TCGGTTTATTCAATCAAATTTAATCAGATGCCTGGTGAGGCTACTAGAGAAATACGGCTG
GTGTTTTTGATTTCATTTGTCATGTGTCATCACTACCCTGTTAAATGAATGAATAATATG
AATTGTCTTGATCCTAAAAAAAAAAAAAAAAAAGGTTTTGCTGTGCAAGCAATGTTGTAT
CTTGTTGAGTTCATTTCGACCCTACAACCAAATGCTCTGCTATTTTCTTAAAAAAGAAAA
A

Homology of Contig U35_14175 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g50885.1	378	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi1g10630.1	378
Arabidopsis v10	AT3G12110.1	377	\| Symbols: ACT11 \| actin-11 \| chr3:3858116-3859609 FORWARD LENGTH=377