barSeed - Barley Seed Development Database

Probe CUST_3551_PI390587928

Source Contig U35_18176

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3551_PI390587928	Hv_44K_v2	CCAATGTGAATTAAATCTTGAGCCGTCATCAGAAGTTTTGGACATTTTCTTGCTGAAAAA	1390	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.545	1.853	1.193	0.859	0.339	0.397
Raw	1214.141	2287.790	1289.772	1435.505	201.945	258.276

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_18176	1462	3e-25	1391 - 1450	100	60 / 60	plus

Contig Sequence (1462 bp)

>U35_18176 1462 Hv_44K_v2
GGGAGCGCCCGCCCGCCGCGCGGCGGCGCGGCCAAGCTCACGCCGGCTGAGGAGGAGCTC
CTGCACCGCCAGGCGCTCGCCATGGCCATCCACCAGCACCTCGACGCCGGCGGCTCCATG
TCGCGCCGCATCGACGCCGGCGCCGGTTCCATGTCCCGACGAATCGGCCCCGGCTCCACC
AGCTCCCGACGCCACGGCAACCTCCCGGACTCCGTCACCAATGCCACCAAGGCTGTCCAA
ATAGTTTTAGAGAACTTAGAAACCAAGAAAATTGTTCTTGTCCACGGGGAAGGATTTGGT
GCTTGGTGTTGGTACAAGACCATCTCTCTCTTGGAGGAAGCTGGCCTCGATCCTGTTGCC
TTAGATCTCACAGGTTCAGGCATAGACCACACTGATACAAACAGCATAGCTACATTGGAA
GAGTACTCCAAACCACTAATTGATTACCTCAGTAAACTCCCTGAGAACGAGAAGGTTGTT
TTGGTCGGTCATAGTTGTGGAGGTGCAAGTGTGTCATATGCCTTAGAACACTGCCCAAAA
AAGATCTCAAAGGCTGTATTCCTTACTGCCACAATGGTAAAGGATAGCCAGAGGCCCTTC
GATGTGTTCTCTGAAGAGCTTGCGTCGGCAGATGTTTTCTTGCAAGAATCACAGTATTTA
CTTTATGGAAATGGGAAGGACAAGCCTCCAACCGGGCTCAGGTTTGACAAGCAGCAGATC
AAGGGGTTATATTTCAACCAAAGTCCTTCCAAGGATATCGCGCTGGCCACCGTGTCCATG
AGGCCCATCCCTTTAGCCCCGATCATGGAGAAGCTGTCTCTCACGGCGGAGAACTACGGC
AGCATCCGCCGCTACTTCATCCAGACGCTGGACGACCGGATGCTGTCGCCCGACGTCCAG
GAGAAGCTGGTCCGGGAGAGCCCGCCCGACGGCATCTTCAAGATAAAGGGCGGCGACCAC
TGCCCCTTCTTCTCGAAGCCGCAGTCCCTCCACAAGATCCTGCTGGAGATCGTGCAGATC
CAAGCTCCGGGGGCGCTGCTCCCGGGCAAAGCAAAGACCCTAGAAGAAGAAGAGGAGGAG
AGCGCCGAGAAGTCATCGTAACCGTCCGAATGCCATGCGTGTACATGAAACGAGTAGCAC
ATAGGTTGCGGTTTGCTAAAGGAGAAGAATACAGGGAGGGATTAATTGGAGTCGGTCAGT
CAGTCAGTCAGCCAGAGATCAAAATAATGTAGTTAGTTGAAGAAGCGGGACATCTTTTTT
TCTTTTGTGATGAATGATGAGGTATAGTGTATGGGCCTGTGAGAGATGTTTTACCAATGT
GAATTAAATCTTGAGCCGTCATCAGAAGTTTGGGACAGGTATAGTGTATGGGCCTGTGAG
AGATGTTCTACCAATGTGAATTAAATCTTGAGCCGTCATCAGAAGTTTTGGACATTTTCT
TGCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g01850.1	399	0.0	protein\|esterase, putative, expressed
Brachypodium v1_2	Bradi3g13420.1	397	0.0
Arabidopsis v10	AT1G33990.1	348	7e-152	\| Symbols: ATMES14, MES14 \| methyl esterase 14 \| chr1:12355909-12357894 FORWARD LENGTH=348