- Probe CUST_35505_PI390587928
- Source Contig U35_38130
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35505_PI390587928 | Hv_44K_v2 | CTAGAGAAAACATTTTTTATTTTATTTTGGTTGGCCTCAGTGGGCTTTTCCGCTGTATAA | 237 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 17.061 | 3.764 | 1.155 | 0.787 | 0.628 | 0.783 |
| Raw | 192.353 | 63.227 | 18.844 | 20.080 | 3.867 | 7.300 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK368027 | 4196 | 2e-24 | 4115 - 4174 | 100 | 60 / 60 | plus | ABC33970 |
| Harvest21 | ABC33970 | 312 | 3e-25 | 238 - 297 | 100 | 60 / 60 | plus | ABC33970 |
| Harvest35 | U35_38130 | 312 | 3e-25 | 238 - 297 | 100 | 60 / 60 | plus |
Contig Sequence (312 bp)
>U35_38130 312 Hv_44K_v2 GGTGCCGTTTAATTTGCATCTTGTGGGGTTTGCGCTCCGAACTTTTGCTGGAGGGCGAGA CGGTTGGTGAGCCGCCCACCCCCCCATGAGGTGTGTTTCGTGGCAGAAATCATGGCTTTG CGAGACAGGGCTTTTGGGAGTGGATCCATTGATTAGTTAATTAACTGGAAACAAACAGGC CAATGCCAGCTCTGGTTGCCAGGCAGCACAGGATGAATGGATACAAAAAAGAAAATACTA GAGAAAACATTTTTTATTTTATTTTGGTTGGCCTCAGTGGGCTTTTCCGCTGTATAAAAA AAAAAAAAAAAA
Homology of Contig U35_38130 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |