barSeed - Barley Seed Development Database

Probe CUST_35502_PI390587928

Source Contig U35_38133

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35502_PI390587928	Hv_44K_v2	TATGCTTGCTTTTGCTCTCTTGGCGTTGTTTGCCCAACCATGACATTAACTGCTGTTTCC	274	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248406.1	4436	2e-24	2889 - 2948	100	60 / 60	plus	ABC01563 ABC10797
MLOC	MLOC_4112.1	1661	2e-24	1057 - 1116	100	60 / 60	minus	ABC10797
JLOC1	JLOC1_2508.1	1759	8e-25	624 - 683	100	60 / 60	plus
Harvest21	ABC33973	586	3e-25	275 - 334	100	60 / 60	plus
Harvest35	U35_38133	586	3e-25	275 - 334	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_38133 586 Hv_44K_v2
TATGGGGCACGAGGCACATCTAACAAAAGTAACAAACAAGAGGCTATGTACAAAGAGAGC
TATTAAAAAAATCTCCCAAAAATCTTGGAAAAAATAGTACCCCTCTTGTTCGAATGTAGA
TCCCTCCAACTCGTAACTTTCAGTCTTTCAGCATTTATTTATATGCCTTAGAATTTGAGA
AATGTTTGCAGAAGCCATGTGTGAAATTAAGCATAAGAATTGATGCTCATAATGTCTCTT
GGACTCCAAACATATTATAAATTAACCATTCTAATATGCTTGCTTTTGCTCTCTTGGCGT
TGTTTGCCCAACCATGACATTAACTGCTGTTTCCTGTAGGCTGCATCTGTTATCAGAAAT
TTATCACTATTGTGGAAGGACATCTGCTCACAGAGTTGCTTCAGAAGCCAGAACAAAGCT
ATTTGCTGTCTTGCTTGCATGGCAACCAACGAAAACCTCCCACCAAATGTCATTAGGCAA
TTGGCTAAAGAATTGAAGAATCTTGACCAGTCACCTCCAGAAGGGATAAGAGTGATTGTG
AATGACGATGACTTCACAAGTATTTGTGCAGATATAGATGGCCCTG

Homology of Contig U35_38133 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None