- Probe CUST_35500_PI390587928
- Source Contig U35_38136
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35500_PI390587928 | Hv_44K_v2 | ATCAAGACCTGGCAGGGTGGTATAGGGCTGGTTCAAGACATAAGGTTCTCAAACATACAA | 541 | GeneList: paleturquoise MasterList: Hydrolysis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.148 | 5.983 | 1.358 | 0.849 | 0.719 | 0.640 |
| Raw | 75.121 | 80.898 | 17.966 | 16.912 | 3.047 | 3.112 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4738.7 | 1705 | 2e-24 | 1078 - 1137 | 100 | 60 / 60 | plus | ABC48447 |
| MLOC | MLOC_4738.6 | 2395 | 2e-24 | 1794 - 1853 | 100 | 60 / 60 | plus | ABC48447 |
| MLOC | MLOC_4738.2 | 3063 | 2e-24 | 2472 - 2531 | 100 | 60 / 60 | plus | ABC48447 |
| MLOC | MLOC_4738.5 | 1521 | 2e-24 | 1441 - 1500 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_4738.3 | 3159 | 2e-24 | 2568 - 2627 | 100 | 60 / 60 | plus | ABC48447 |
| MLOC | MLOC_4738.4 | 1454 | 2e-24 | 1234 - 1293 | 100 | 60 / 60 | plus | ABC48447 |
| JLOC1 | JLOC1_2987.3 | 2956 | 8e-25 | 1433 - 1492 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2987.2 | 2959 | 8e-25 | 1436 - 1495 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2987.1 | 3320 | 8e-25 | 1797 - 1856 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC33976 | 611 | 3e-25 | 542 - 601 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38136 | 611 | 3e-25 | 542 - 601 | 100 | 60 / 60 | plus |
Contig Sequence (611 bp)
>U35_38136 611 Hv_44K_v2 GCTTGAATTCACCAAACTAAGTGGATTATCAATTCAAGGCAGTGGCACCATAAATGGTAG GGGGCAACAGTGGTGGACCTACTCAGACCCAAATGACGATGAGGATGACGACACATACAA TCAGGAGCTTGAAAGGATGCCACGGGTTAAACCTACGGCATTGAGGTTCTATGGTTCTTC AAATGTCGTAGTGGCTGGCATCACAATTGTCAACAGCTCACAGTGCCATCTCAAGTTTGA CAACTGTCAAGGGGTGCTGGTCCACGACCTGACAATATCCTCCCCTGAGAACAGTCTCAA CACCGACGGAATACACCTGCAGAACTCCAAAGATGTCAGCATTCATCATACCAACTTGGC TTGCGGTGACGATTGCATCTCCATCCAGACAGGATGTAGCAACATATACATACACAATGT GAATTGTGGACCAGGCCATGGAATCAGCATTGGTGGACTAGGCCGGGACAACACAAAAGC ATGCGTCTCTAATGTTACAGTAAGAGATGTCAACATGTTCAGAACAATGACTGGTGTCAG AATCAAGACCTGGCAGGGTGGTATAGGGCTGGTTCAAGACATAAGGTTCTCAAACATACA AGTCTCCGAAG
Homology of Contig U35_38136 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g45060.1 | 424 | 5e-115 | protein|polygalacturonase, putative, expressed |
| Brachypodium v1_2 | Bradi2g44750.2 | 544 | 1e-122 | |
| Arabidopsis v10 | AT1G60590.1 | 540 | 3e-83 | Pectin lyase-like superfamily protein | chr1:22314426-22316867 REVERSE LENGTH=540 |