barSeed - Barley Seed Development Database

Probe CUST_354_PI390587928

Source Contig U35_9373

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_354_PI390587928	Hv_44K_v2	CCCAGGGCGGATTTAAAGGTTTAAATCTGCTATGCTATATTGTTATCTTTCCATTTTCTT	729	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.464	0.793	0.972	1.303	0.954	1.139
Raw	231.939	654.397	664.763	1403.368	355.162	465.671

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54402.3	2579	2e-24	2299 - 2358	100	60 / 60	plus	ABC45977
MLOC	MLOC_54402.5	1975	2e-24	1695 - 1754	100	60 / 60	plus	ABC45977
MLOC	MLOC_54402.4	2151	2e-24	1809 - 1868	100	60 / 60	plus	ABC45977
JLOC1	JLOC1_35013.4	2821	8e-25	2298 - 2357	100	60 / 60	plus
JLOC1	JLOC1_35013.3	2344	8e-25	1821 - 1880	100	60 / 60	plus
JLOC1	JLOC1_35013.2	2334	8e-25	1811 - 1870	100	60 / 60	plus
JLOC1	JLOC1_35013.1	2836	8e-25	2313 - 2372	100	60 / 60	plus
Harvest21	ABC45977	645	3e-25	48 - 107	100	60 / 60	minus	ABC45977
Harvest35	U35_9373	878	3e-25	730 - 789	100	60 / 60	plus

Contig Sequence (878 bp)

>U35_9373 878 Hv_44K_v2
GCAGTAAAATAGTTAGATCAAATGATTCACATGCAACTGTTCTCTCTCCTGACGAGGGGA
AATGCAAGCTCTGTTCAAAGCTATTGAAGGAACGGTCTACATGGAGTTCTCATGATCTGG
GAGTAGTAGCTGTTCTATTCTGTGGTCATGCATACCATGCAAACTGTTTGGATAGTACTA
CTTCAGAGAGTGAGAAATATGATCCTCCATGTCCTGTATGCACCCATGGTGAGAAAGGTG
CAGCAAAGCTATTTGGTAAGCTGGACTCAAAGAGTAAGAGCAGGAAATCTAAAAATGTGA
TGTCAGATACTGATATAGATAGGAGCTCTAAGCACAAGAAGAGAAGTATGAGGGAACCCA
GGTTAGGCACAAGTTCTAGCATGAAGGATTCATTTCGTCGACCATTTTTAAAGAGGCATT
TTTCAATTGGTTCTCGACCGCCAAGATCACTCCTAGGGAGTGAGCCAACAGGAAAGAAAA
GCTTCTGGGCAAGACACTGGAGAGAATAGCCGGCTACACATCATCAACGTGGAAATCATT
TCATGGTGTGAGCGAGCAAGGATAGAAGTGAAGCTACATATTTTTATGTTTCGGTACTAT
TCATTAAAGCACACTTTGTGCTGAACAAATCTAGTGAGACTAGAAATCTTCTTATACCTG
CAACTGAGGATTGTTGCGGTCTAACTTTATTCCTAGGCAATGTAATAGAATAGAAAATGG
GAATAGTCTCCCAGGGCGGATTTAAAGGTTTAAATCTGCTATGCTATATTGTTATCTTTC
CATTTTCTTTTGTAATCATTATTTGCCAGTTAGTATGCATAATTTGGATAAAACAAAACA
GTTTGACACCTGATTAGAACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_9373 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g15630.2	431	5e-71	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi2g09510.1	428	1e-96
Arabidopsis v10	None