barSeed - Barley Seed Development Database

Probe CUST_35494_PI390587928

Source Contig U35_14183

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35494_PI390587928	Hv_44K_v2	CTCGTATTTTTCGTTCCTTGTGCGCTACATGTATCAACAATGACATAATAAATACGTACT	498	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.996	4.886	1.248	0.751	0.209	0.261
Raw	1498.072	1549.156	383.779	395.124	34.660	48.949

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15208.1	1069	2e-24	567 - 626	100	60 / 60	plus	ABC01326
JLOC1	JLOC1_10422.1	793	8e-25	547 - 606	100	60 / 60	plus
Harvest21	ABC01329	615	3e-25	499 - 558	100	60 / 60	plus
Harvest21	ABC01326	548	3e-25	456 - 515	100	60 / 60	plus	ABC01326
Harvest35	U35_14183	613	3e-25	499 - 558	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_14183 613 Hv_44K_v2
TGGTCGGCCATGGCTCCTACCCCAACACGCGGACGAGCACGAACACAGCCACACAAGCTA
AACTGTCTCGTCAGTAGTAATATCAAAACTTCTCAGTGAGCAATGGCAAAGAGTCTCGCC
GTCGCGCTCCTGCTACTGGTGGTGCTCGCGTCATGCGACGGGCGGGAGCTGAAAGAGAAG
GTTGCAGCGACACACGGTGCCGGTGCCAGCGGTGGCGTCGGCGACTCCAAGGCTTTGGAC
TTGCCTCTGCTGGGGGGAACCGGTACCGGAACAAGCACCATTACCGGCCCGCTGGTGGTG
ATCCCTGGGATCCCTGCTATCGGCCCATGATCATCTCTACCTCATGTGCTGGCGCTACAA
GAAGCTAAAGCTCGCCTTGTCCCTTTAGATTCTATAGGTAGCACCGCCAGGAAGAAAAAG
GCCGACGTTTCGCTCATGTCCATGTTCGGTACTGAGCGTCTGTATCAACTGTCATCTGTA
TTTATTTCCAGTTCCCGTCTCGTATTTTTCGTTCCTTGTGCGCTACATGTATCAACAATG
ACATAATAAATACGTACTTACTATGAAAAAAAAAAAAAAAAAGTCTTCTTGGATACAAAA
AAAAAAAAAAAAA

Homology of Contig U35_14183 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None