barSeed - Barley Seed Development Database

Probe CUST_35493_PI390587928

Source Contig U35_14184

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35493_PI390587928	Hv_44K_v2	GTTCGTTGATGTGTTTTTACATGTATCATGGACATCATAAATACTACCGGTACTTTGTCA	716	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.037	4.569	1.232	0.750	0.930	0.915
Raw	58.064	50.964	12.686	10.759	2.655	4.066

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18220.1	607	2e-24	524 - 583	100	60 / 60	plus	ABC01337
MLOC	MLOC_18221.1	965	2e-24	680 - 739	100	60 / 60	plus	ABC01337
JLOC1	JLOC1_12603.1	994	8e-25	680 - 739	100	60 / 60	plus
Harvest21	ABC01337	588	3e-25	512 - 571	100	60 / 60	plus	ABC01337
Harvest21	ABC01331	792	1e-23	711 - 770	98	59 / 60	plus
Harvest35	U35_14184	793	3e-25	717 - 776	100	60 / 60	plus

Contig Sequence (793 bp)

>U35_14184 793 Hv_44K_v2
ATGGCGCACACCCAATTTCGCCTTATATCTACTCTCTAAGCAGCAAATTCGGACATCTGG
CTGATAAGGACCGAAATGAAATTAAAGAGCAGCTCGATCCTTCTGCTAGTGGAGGAATGA
ATGGTTACATCTCACTTTGTGGTGGGGATCCAAGTCCGCTCGTCTTCAGATCTCCGGTGG
ATGGACTGGAGGATATTATGGACAAGCACGAGGCACACACGACACAATCTCCTTAGCATT
ACCAGAGCCTCCCAGTTAGCAATGGCAAAGTGTCTCGCCGTCGCGCTCCTGCTAGTGGTG
CTGCTCGCGTCCTGCGACGGGAGGGAGCTGAACGAGAAGGCTGCAGCGACACGCGGTGCC
GGTGTCGGCGGCGGCGTCGGCGAGTCCAAGGCTATGGGGTTGCCGGACTTGCCAGCTGTG
ACGCTCCCCACGACCCCGACGCTCCCCACGGCACCGACGCTCCCCACACTCCCGACGCTC
CCTACGGTCCCGACTCTCCCGCTACTGGGAACCATTACGGGTACCAGTACCATTACCGGC
CCGGTGGTGGTGCTTCCGGCGGTCCCTGCTCACCCATGATTATCTCTACTTGTACGGTGT
ACGTGCCTAGATCATAGCACCGTTCGCAGGGAAAGACACCGGCGTTGCGTTCATGTCCAA
GGCCCTTCCTTGATGGGAGTCTGTATTTATCTTCAGTTAAAGTTCTTGTATTGTTCGTTC
GTTGATGTGTTTTTACATGTATCATGGACATCATAAATACTACCGGTACTTTGTCAAAAA
AAAAAAAAAAAAA

Homology of Contig U35_14184 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None