barSeed - Barley Seed Development Database

Probe CUST_35483_PI390587928

Source Contig U35_26160

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35483_PI390587928	Hv_44K_v2	CTGTATCTCTCTGTAATGAACTGCATTGCATTAATACCTCTTTTCCGTTCCTAGTAAAAA	550	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.525	4.942	1.058	0.751	0.833	0.741
Raw	55.335	65.422	11.627	13.132	2.949	2.916

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3697.1	916	3e-22	552 - 607	100	56 / 56	plus	ABC47907
Harvest21	ABC47907	618	3e-25	548 - 607	100	60 / 60	plus	ABC47907
Harvest35	U35_26160	621	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_26160 621 Hv_44K_v2
GAGGCCCGCGTGCGCAGGAGACGCCTCCCCAGCCGGCGCCGGCGACGTCGAAGCCACGCC
CACACGGCCCTCCTACGCACTGTTCGTCGCCACCGACGCCGAAGGCGCCGGAGCAGGAGG
ATTTGGGTACTCATATGGATACTCATACTCCCCCAGGCAGCGACGGCGACGCGGCGGCCG
GCGAGGGCGAGGGCGAGGGAAAGGAGTCCCTGGAAAACCCGCTGGTGTCCATGGAGTGCT
TCATCTTCCTGTGACATGACAGTAACACTAGACCTGCCTGCCTGCTCTCGCCCGTCCCTC
CCACAGTAAGTAATCAATCAGCTTACTCCATTCCGTTGTCACAGTTAGGAGTAACGAGAT
TTAGAAGCCGCGCTGTTTTGGTGAATGTATTTCTGCTGGCAACTTCTTCCCGGGCTGGAA
TTTTGTATCCCGGGAAAGAAACCAGTCCCAGCTCATTGGTGTGCTCTGTATAACTACTTC
CTGCCTCTGCCTCTGCCTCTGGTGTCCTGTGTAATCTGTAGAATGTAGCTAATCCAAGCA
AGCCAGGCCACTGTATCTCTCTGTAATGAACTGCATTGCATTAATACCTCTTTTCCGTTC
CTAGTAAAAAAAAAAAAAAAA

Homology of Contig U35_26160 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None