barSeed - Barley Seed Development Database

Probe CUST_35468_PI390587928

Source Contig U35_38146

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35468_PI390587928	Hv_44K_v2	GACCTACAGAGAGGCTGTTACAGACTTATATTTGGATCTGATATGTAGTGCTAAGGTAAA	606	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.084	1.257	1.261	0.937	0.515	0.464
Raw	55.304	91.266	85.752	95.061	19.417	18.962

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376906	2331	2e-24	1577 - 1636	100	60 / 60	plus	ABC33988
MLOC	MLOC_76536.1	2065	2e-24	1264 - 1323	100	60 / 60	plus	ABC33988
JLOC1	JLOC1_51033.1	1848	8e-25	1271 - 1330	100	60 / 60	plus
Harvest21	ABC33988	674	3e-25	607 - 666	100	60 / 60	plus	ABC33988
Harvest35	U35_38146	674	3e-25	607 - 666	100	60 / 60	plus

Contig Sequence (674 bp)

>U35_38146 674 Hv_44K_v2
GCCTTTGTGCTGGCATTGGTGGTGGAGCTCTTCCAATGTCCATCAGGATGGGACTTGGCT
TCGATGTATTGGGCGTCGAGGCTGATTGTGTTGTCCTAGACGTCGCGAGGAACTATTTTG
GACTGGTGGAGGATGAGTTCCTTCATGTTCGTGTTGGCGATGCTATTCAAATGATTCAGG
CTTTTGCACATCCAGATGAGCCTGATTCGAAATTCAGTGCAGTTATGGTGGATCTTGACT
CTCCTGATGCTATGTGTGGTGTCAGTGCGCCGCCATTGGAGATGACCCATAGAAGCACCT
TTCTTGCTGCGCGCAGAATTCTAGATGATAATGGAGTGCTGGTACTGAATGTAATCCCTC
CTGCTGCTGATGCATCCTTCTACAAAGGGCTGATTGATGTTCTTCACCAGGTTTTCTTTG
AGTTATATGAAATAGATGTTGGTAATGGTGAAAATTTTGTTCTTGTTGCCAGAGTGTCAC
CGACTAAAAGCACCATTCTTGATAGTTCAAGGCTCTTTCAGACGGAATTGAGGAAATTAA
CTGGAGATTTTTTGGAACGTATAAAAAAAGTTGAAATTCCAAGTTACTCTCTCTGTTTGA
AGTCATGACCTACAGAGAGGCTGTTACAGACTTATATTTGGATCTGATATGTAGTGCTAA
GGTAAAAAAAAATG

Homology of Contig U35_38146 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g40890.1	467	6e-86	protein\|spermidine synthase-related, putative, expressed
Brachypodium v1_2	Bradi3g40450.1	472	2e-95
Arabidopsis v10	None