barSeed - Barley Seed Development Database

Probe CUST_35467_PI390587928

Source Contig U35_38149

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35467_PI390587928	Hv_44K_v2	TAGAAGGATGGTGCCAGATCGCATATCGGGTTACTTTGCTTACAGTTACAGTTTGAGGAA	513	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17795.2	686	7e-23	409 - 465	100	57 / 57	plus	ABC25813
MLOC	MLOC_17795.1	776	7e-23	537 - 593	100	57 / 57	plus	ABC25813
JLOC1	JLOC1_12289.1	671	4e-23	410 - 466	100	57 / 57	plus
Harvest21	ABC33992	576	3e-25	514 - 573	100	60 / 60	plus
Harvest35	U35_38149	576	3e-25	514 - 573	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_38149 576 Hv_44K_v2
GGTATATCAGAGGTGCAGCTTTTTTTGATGCATTCAACTGTACTTTCAGGGATAAGCTGG
TCAATGCAGGAAAATCTAAAAGGAAGCGACTAAACTCAACATTTGAAGAGCAACAAGAAC
AGTTACGGGTTCTTCATGAGAAGTTTAAGGAGGAGGTTAATCAGCAGTTGCTTGGTTGCA
AGAACTCTCTCGAGGAACTTGAAGCCTATCATTCAGAACTTAAGGGAGTAGCTGAGAAGC
AAAAAGCATCACACAAGAAGCTCCTCCAACAAGCCGAGAGCAGAGTTGGTACTCAGCTCA
ACGATGCTGAAATCAAAATCGCGAAGGTTCAGAAGAGAGCTCGGAGGAAGATGAATGGCC
TAAAACACGTGCTCAAGGAGCTCATCACCGAGACCGCAGATTGATCCAGCTCACCTGCTC
TACAGGACAGAAGTAGATAGCTAAGGCGAAACCTGTAGGGCGCGACACCACATCACGAAC
AGCAGGTCCACGTACGGGTTATATATATATATATAGAAGGATGGTGCCAGATCGCATATC
GGGTTACTTTGCTTACAGTTACAGTTTGAGGAACTA

Homology of Contig U35_38149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g26560.1	815	2e-56	protein\|expressed protein
Brachypodium v1_2	Bradi3g59847.1	851	9e-57
Arabidopsis v10	None