- Probe CUST_35447_PI390587928
- Source Contig U35_26173
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35447_PI390587928 | Hv_44K_v2 | GTGACAGAGGCAGACTTCAGGACCTATTTTGAGCAGTTTGGCACGATCACCGATGTTGTC | 513 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.637 | 0.592 | 1.637 | 2.143 | 0.873 | 1.252 |
| Raw | 26.070 | 34.721 | 90.724 | 176.069 | 28.279 | 42.020 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_74552.1 | 1993 | 2e-24 | 1332 - 1391 | 100 | 60 / 60 | minus | ABC20899 |
| MLOC | MLOC_74552.2 | 1878 | 2e-24 | 1332 - 1391 | 100 | 60 / 60 | minus | ABC20899 |
| JLOC1 | JLOC1_49686.2 | 2032 | 8e-25 | 642 - 701 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_49686.1 | 2076 | 8e-25 | 686 - 745 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28166 | 665 | 3e-25 | 579 - 638 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC24046 | 573 | 3e-25 | 514 - 573 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29015 | 665 | 3e-25 | 579 - 638 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26173 | 573 | 3e-25 | 514 - 573 | 100 | 60 / 60 | plus |
Contig Sequence (573 bp)
>U35_26173 573 Hv_44K_v2 GGAGAGACACACAACAAGAAAGGAAGGAGAGGAAGAGGAGGAGGAGGAGGTGGTGGTGCC GTGGTATGGCCTTTGAGGTTGCCATGCCTCCCCCAAGATCCTAGGCAGCCAGCTCGAGAC CCCTTCCCTGGATCAACCGGTTGGAAGTAGGAGCCCGAACCGGAGATGGAGGCGGATGCC GGGAAGCTGTTCATCGGTGGCATCTCGTGGGACACCAACGAGGACCGCCTCCGGGAGTAC TTTGAGAAGTACGGGGAGGTGGTGGAGGCCGTCATCATGCGCGACCGAGCCACCGGCCGC GCCCGGGGCTTCGGGTTCATCGTGTTCGCCGATCCAGCAGTTGCAGAGCGTGTAATAATG GAGAAGCATATGATCGATGGCCGGATGGTGGAGGCCAAGAAAGCTGTCCCTAGAGACGAT CAGCAAGCTCTTAGCAAGAGTGGCGGCAGTGCTCATGGATCACCAGGGCCCAGTCGCACC AAGAAGATTTTCGTCGGGGGTCTTGCATCCACCGTGACAGAGGCAGACTTCAGGACCTAT TTTGAGCAGTTTGGCACGATCACCGATGTTGTC
Homology of Contig U35_26173 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g41890.1 | 468 | 2e-73 | protein|RNA recognition motif containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g12200.1 | 464 | 4e-75 | |
| Arabidopsis v10 | AT5G55550.3 | 460 | 4e-60 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22502135-22503658 REVERSE LENGTH=460 |