barSeed - Barley Seed Development Database

Probe CUST_35442_PI390587928

Source Contig U35_26177

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35442_PI390587928	Hv_44K_v2	AGTCACCAAAATTCTTGATTCTGGTATACACCAACCACCGCAAAATCCAAAATGGCGTCC	333	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32662.1	3145	2e-24	2944 - 3003	100	60 / 60	minus	ABC14350
MLOC	MLOC_32662.2	3287	2e-24	2866 - 2925	100	60 / 60	minus	ABC14350
JLOC1	JLOC1_21265.1	3463	8e-25	241 - 300	100	60 / 60	plus
Harvest21	ABC34561	627	3e-25	319 - 378	100	60 / 60	plus
Harvest35	U35_26177	642	3e-25	334 - 393	100	60 / 60	plus

Contig Sequence (642 bp)

>U35_26177 642 Hv_44K_v2
GAACAATCCCGCCAGAAAAGAAAGCACTCAGGGGAGCGCGTGCTCCACTTCTCGCCACTT
TTGCCCACCAAACGCGGCTCAACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGGG
GCCTTCTTCACCTCCCCCGCGGGCTCCGGTCTCTCCTCCCAGTTCCCACACCAGCGAGCT
CGGCCTTCATTCCTGCTCTGCTCAGGTTCTGTGGCTTTCTATGTGTGCCTTCTTCACTCA
ACAATAGTCTGAAATCCGTGCCCCAAAAACCCATGAAGAAAATCACAATGTTCTTGCATC
ACGCAAACATCCAGTAGCAAGTTGACGCAGCGGAGTCACCAAAATTCTTGATTCTGGTAT
ACACCAACCACCGCAAAATCCAAAATGGCGTCCCCAACCCTACCAGTTACCCTCACATGC
CTAACACTCTTAGCTCTCTTGTCTCTTGCCATGGCGGCCGATAACAACAACTCCACTGGC
CTCATCCTCGTAAATTGCGGAGCATCAGGCCAAGAAGACGATGATAGTGGCCGGACTTGG
GGCGAAGACACTGGCTCCAAGTTCGCGCCGTCATTGAAAGGAGTTGCAGCCAATGCTCAA
CGCCAAGACTCTTCGCTCCCCTCCACGGTCCCTTTTATGACT

Homology of Contig U35_26177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None