barSeed - Barley Seed Development Database

Probe CUST_35439_PI390587928

Source Contig U35_38152

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35439_PI390587928	Hv_44K_v2	GTACCTGCAGAAATCTTTTGCCGATCGCTATGGATCCCGTTCCAATGCATTAGTTTCTCT	484	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.781	1.055	1.654	1.743	0.636	0.541
Raw	14.363	27.205	39.656	67.538	7.853	7.721

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70636.2	3575	2e-24	1001 - 1060	100	60 / 60	minus	None
MLOC	MLOC_70636.1	3715	2e-24	1040 - 1099	100	60 / 60	minus	None
JLOC1	JLOC1_46886.2	3580	8e-25	2342 - 2401	100	60 / 60	plus
JLOC1	JLOC1_46886.1	3754	8e-25	2516 - 2575	100	60 / 60	plus
Harvest21	ABC33997	548	3e-25	485 - 544	100	60 / 60	plus
Harvest35	U35_38152	548	3e-25	485 - 544	100	60 / 60	plus

Contig Sequence (548 bp)

>U35_38152 548 Hv_44K_v2
AAACAATGGAGAAAGCTTTCTGGGATGTGGTTGTGGATTCAATGAAAGGAGACACACCAG
ACTACAGTTATCTGGTCAACCTAGTAAAGGAAGTCAGGGATGCATTGCACCAGATGGCTA
GTAAAGGGTGGAAAGAAGAAATAACAAACAATATTAACCTTGAAATTTTGTCCCAGGTAC
TTGAGTCGAGCTCGAGCACCCAAGGCACACAATATTTGGGGCAGATTCTGCAGTACTCTC
TGGGTATGCTGCGTAAACTATCTTCTCCTGCAAAGGAAGACGAAATGAAGATCAGTCATG
ACAAATTATTGAATGAATTGATCGAACACTCTGATTCTCATGATAGAGGTCCAAATGCAT
TCATAATAGCTGTCATCAAGGGCTTGCGGTTCACTATGGAAGAATTAAAGGATCTTCAGT
CTGAAGTCAGTAGAGCACGAATCCAACTACTGAAACCAATTATAAAGGGCTCAGGTGGGG
TCGAGTACCTGCAGAAATCTTTTGCCGATCGCTATGGATCCCGTTCCAATGCATTAGTTT
CTCTCACT

Homology of Contig U35_38152 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35080.6	759	3e-88	protein\|T-complex protein 11, putative, expressed
Brachypodium v1_2	Bradi3g45830.1	1192	1e-95
Arabidopsis v10	None