barSeed - Barley Seed Development Database

Probe CUST_35436_PI390587928

Source Contig U35_38156

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35436_PI390587928	Hv_44K_v2	CTGGTACAGTTGATGCTACAGCTGCATTTGGTTTGCAAATGCCATCTGACAAACTTGATA	535	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10222.1	2705	2e-24	1797 - 1856	100	60 / 60	plus	ABC13319
MLOC	MLOC_10222.2	3315	2e-24	1830 - 1889	100	60 / 60	plus	ABC13319
JLOC1	JLOC1_6674.6	2747	8e-25	1305 - 1364	100	60 / 60	plus
JLOC1	JLOC1_6674.5	3005	8e-25	1563 - 1622	100	60 / 60	plus
JLOC1	JLOC1_6674.4	3272	8e-25	1830 - 1889	100	60 / 60	plus
JLOC1	JLOC1_6674.3	3080	8e-25	1638 - 1697	100	60 / 60	plus
JLOC1	JLOC1_6674.2	3239	8e-25	1797 - 1856	100	60 / 60	plus
JLOC1	JLOC1_6674.1	3080	8e-25	1638 - 1697	100	60 / 60	plus
Harvest21	ABC34004	622	3e-25	536 - 595	100	60 / 60	plus
Harvest35	U35_38156	622	3e-25	536 - 595	100	60 / 60	plus

Contig Sequence (622 bp)

>U35_38156 622 Hv_44K_v2
GAACGACAAGTAGACATATCTGAAACTATCCCAGCAGATAACAGAAATGCTGGCACCTCT
GGTGCAGAGGAAAGTGCAGCTCTTGATCACCAACTTCATATGGTTCTACCAGATACCAAC
AATGTTGACATCTCTGGTGCAAAGGACATTGCAGCTCTTGATCACCATCCGAACATGGGA
CTACCAGATGGAGCTCACAACGTTGGCATCTCTGGTGCAAATGATAGTGCAGCTCTGGAT
CACCAACTAAATATGGGACTACCAGATGGAGCTCACAATGTTGGCATCTCCGGTGCAAAT
GACAGTGTAGCTCTTGATCACCAACTTCATATAGGACTACCAGATGGAGCTCACAATGTT
GGCATCTCTGGCGCAAATGACAGTGCAGCTCTTGTTCACCAACTTCATATGGGACTACCA
GATGGAGCTCACAGTGTCGGCATCTCTGGTGCAAATGACAGTGCAGCTCTTGATCACCAA
CTTCATATGGGACTACCAGATGGAGCTCACTTAGATGCTACACCACAGGAAGCAACTGGT
ACAGTTGATGCTACAGCTGCATTTGGTTTGCAAATGCCATCTGACAAACTTGATAACANC
ATTGAGAAAGTAACTGAATTTG

Homology of Contig U35_38156 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None