barSeed - Barley Seed Development Database

Probe CUST_35435_PI390587928

Source Contig U35_38158

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35435_PI390587928	Hv_44K_v2	TTTAACTTGGATCAGGGAATCCTGCATGCGAATGAGGTTACACCAATGGATTCTGAACAT	580	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57302.8	1718	2e-24	654 - 713	100	60 / 60	plus	ABC36317
MLOC	MLOC_57302.7	1955	2e-24	1064 - 1123	100	60 / 60	plus	ABC36317
MLOC	MLOC_57302.5	2316	2e-24	1425 - 1484	100	60 / 60	plus	ABC36317
MLOC	MLOC_57302.3	2411	2e-24	1521 - 1580	100	60 / 60	plus	ABC36317
MLOC	MLOC_57302.9	1625	2e-24	628 - 687	100	60 / 60	plus	ABC36317
MLOC	MLOC_57302.1	2405	2e-24	1425 - 1484	100	60 / 60	plus	ABC36317
MLOC	MLOC_57302.2	2524	2e-24	1422 - 1481	100	60 / 60	plus	ABC36317
JLOC1	JLOC1_37118.3	2378	8e-25	1338 - 1397	100	60 / 60	plus
JLOC1	JLOC1_37118.2	2447	8e-25	1407 - 1466	100	60 / 60	plus
JLOC1	JLOC1_37118.1	2250	8e-25	1210 - 1269	100	60 / 60	plus
Harvest21	ABC34010	646	3e-25	581 - 640	100	60 / 60	plus
Harvest35	U35_38158	646	3e-25	581 - 640	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_38158 646 Hv_44K_v2
TTGGAAACTTTTGGTGCCATGCCCCCAGAGTGCCAGGGTGACTCTGAAGGTTGATCTGAT
TTTTGAAGAACACGTTGGTATTGATATCCACAAGAAGCATGTGGTCAGCAGGGAGGATGA
TTTGCATGTGACAAAAGCGTATGGGACAGAAAAGCCAAAACCCTTGTCCAGTCTTCCTGC
TGATATTTGTTCGGTTAGCTCCAGGACAGCTCGAACAATTCCAGCTCAAGCTCATATTGG
ACGGAGCCCACTATCGAAAGAGGTTTGTGTTATAGAAGACGATGATGATGCCAACGTTCC
AGACAAAGCTGACAATATGCCGAGAACGAGAACATTTAACAACTTGGCTTCACTAGAGGT
CCCCAGCTTTGACTTAATGCTTGAAGAAGATAATGGAGATATGCAAGATGTATCATTTCC
TGAAGCAGCAAAAGCAGAATGCAGAAGTGCCAGTAGCAGCACAATTTTTGATCACATACG
CAAGAAATCCAGAGATTTTCCAACACTGATGTTGTCAAAGTCGATGGATAGCTCATATGA
ACCTTTGATACTGAAGAAGATGAAGACATCGAGGGACCAGTTTAACTTGGATCAGGGAAT
CCTGCATGCGAATGAGGTTACACCAATGGATTCTGAACATTCCGAG

Homology of Contig U35_38158 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g40450.1	1200	3e-78	protein\|DEAD/DEAH box helicase domain containing protein, expressed
Brachypodium v1_2	Bradi3g48850.1	1309	4e-96
Arabidopsis v10	None