- Probe CUST_35431_PI390587928
- Source Contig U35_40473
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35431_PI390587928 | Hv_44K_v2 | TTTGCTTCTTGCCTCTTCATTTGTTACGACTTGATTCGTGCGGATGTTGCTCTCGAGCTT | 566 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_64329.1 | 4249 | 2e-24 | 3462 - 3521 | 100 | 60 / 60 | plus | ABC05231 ABC18461 |
| MLOC | MLOC_64329.3 | 4408 | 2e-24 | 3373 - 3432 | 100 | 60 / 60 | plus | ABC05231 ABC18461 |
| MLOC | MLOC_64329.2 | 4028 | 2e-24 | 3281 - 3340 | 100 | 60 / 60 | plus | ABC05231 ABC18461 |
| MLOC | MLOC_57760.2 | 5712 | 3e-21 | 604 - 663 | 97 | 58 / 60 | minus | ABC05231 |
| MLOC | MLOC_57760.1 | 5874 | 3e-21 | 874 - 933 | 97 | 58 / 60 | minus | ABC05231 ABC34895 |
| JLOC1 | JLOC1_42228.2 | 4371 | 8e-25 | 3233 - 3292 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42228.1 | 4217 | 8e-25 | 3145 - 3204 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_37489.1 | 6029 | 2e-21 | 5061 - 5120 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC05231 | 2879 | 6e-22 | 2062 - 2121 | 97 | 58 / 60 | plus | ABC05231 |
| Harvest35 | U35_40473 | 628 | 3e-25 | 567 - 626 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1487 | 3376 | 6e-22 | 2515 - 2574 | 97 | 58 / 60 | plus |
Contig Sequence (628 bp)
>U35_40473 628 Hv_44K_v2 CTATTATGAACCATTCTCCAGATGCATGGGATCATATGCAATTTAAGGATGTTGCTGTTA AGGTTGCAAATGTTGAGATATATTACAAGGCTGTGCACTTCTATTTGCAAGAACACCCTG ATCTCATCAATGATCTTCTCAATGTTCTTGCGCTTCGCTTGGATCACACAAGAGTCATAG ACATAATGCGCAAGGCTGGTCAGTTGCATCTTGTGAAACCATACATGGTTGCTGTTCAGA GCAACAATGTCTCTGCTGTCAATGAAGCATTGAATGAGCTTTATGTTGAGGAGGAGGACT ATGAGAAGCTCCGTGAGTCAGTTGACATGCATGATAACTTTGATCAGATAGGTCTTGCCC AGAAGCTTGAGAAACATGAATTGCTTGAGATGAGGAGGATTGCTGCATACATTTACAAGA AAGCTGGTAGATGGAAGCAATCTATTGCCCTATCGAAGAAAGACAACATGTACAAGGATT GCATGGAAACATGCTCACAGTCTGGTGACCGTGAGCTGTCGGAGGATTTACTTGTCTATT TTATCGAGCAGGGAAAGAAAGAATGTTTTGCTTCTTGCCTCTTCATTTGTTACGACTTGA TTCGTGCGGATGTTGCTCTCGAGCTTGC
Homology of Contig U35_40473 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g01380.1 | 1709 | 4e-126 | protein|clathrin heavy chain, putative, expressed |
| Brachypodium v1_2 | Bradi4g26877.1 | 1709 | 1e-126 | |
| Arabidopsis v10 | AT3G08530.1 | 1703 | 3e-114 | Clathrin, heavy chain | chr3:2587171-2595411 REVERSE LENGTH=1703 |