barSeed - Barley Seed Development Database

Probe CUST_35429_PI390587928

Source Contig U35_40474

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35429_PI390587928	Hv_44K_v2	GCTACCGCAACAACTACATCGGCTACAACAGCAACAACTACTGACAGATCGAGAAATGGA	483	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.764	1.354	1.543	1.419	0.610	0.469
Raw	545.648	1472.823	1499.647	2141.354	329.349	274.814

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18157.1	1053	2e-24	197 - 256	100	60 / 60	plus	None
JLOC1	JLOC1_12556.1	1432	8e-25	1108 - 1167	100	60 / 60	plus
Harvest35	U35_40474	543	3e-25	484 - 543	100	60 / 60	plus

Contig Sequence (543 bp)

>U35_40474 543 Hv_44K_v2
CTCCGCCGCTCGACTCGAGAGGACCGACCCCTCAGAAGAACTACGGCTTCATGACGACGG
AGCCTGAGAAGGCTCACCACCTCCGGCACGGGCAGCCTTATCTCGGCGGCTGGGATGCAC
GCGGCCCTCAACAACAGCAACAAGTGTATCCCCATCACCACCACCAGCAGCAGCAGCAGC
AGCACAGACAGCAGTTGGAGCAGCAGGTGTACCGGCAGCAGCAGCAGCAGCACAGGCAGC
CGCCGGAGCAGCAGGCGTACCACCTGCAGCAGCACCAGCAGAGGAGGCAGCCGGAGCAGC
AGATGTACCAGCTGCAGCAGCACAGGCAGTACTCGTCCGGGCCGCAGACTTTCTATGAGC
AGAGCTGCGAGACGACGAATGAGGTGGTGTTCGGCGCGGTGCAGGAGGTGGACAGCAAGC
GGCGCATGGTGGAGATCAAGGCCGTCAACTACGGCGACACCTTCTACGAGCAGTACGGGA
TGCGCTACCGCAACAACTACATCGGCTACAACAGCAACAACTACTGACAGATCGAGAAAT
GGA

Homology of Contig U35_40474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None