barSeed - Barley Seed Development Database

Probe CUST_35420_PI390587928

Source Contig U35_31812

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35420_PI390587928	Hv_44K_v2	AATTGTCTAGCTACGGGTAGCTAGCTGGTGATCACCACGCGCGCTCGCCGCTCGTTTTAA	127	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375174	1770	2e-24	759 - 818	100	60 / 60	plus	ABC20418
MLOC	MLOC_14768.1	391	2e-24	19 - 78	100	60 / 60	minus	None
JLOC1	JLOC1_10089.1	181	8e-25	19 - 78	100	60 / 60	minus
Harvest21	ABC48220	635	3e-25	79 - 138	100	60 / 60	plus
Harvest35	U35_31812	571	3e-25	128 - 187	100	60 / 60	plus
Harvest35	U35_23195	665	3e-25	109 - 168	100	60 / 60	plus

Contig Sequence (571 bp)

>U35_31812 571 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGATACGCATAGGTTACTACTACTAGGCCACGACCATCATC
TGATTGCCGCCGCCCATCCAGCTCACACTGACCGCTTACGTCTCACTCTCTCCTCCCTCT
CCTAGCTAATTGTCTAGCTACGGGTAGCTAGCTGGTGATCACCACGCGCGCTCGCCGCTC
GTTTTAAGCCGGCCGGGTCGGACACGGCATGCGCTGCTCCGCCCGCACGGCAAACCATGG
CTCCAGCTTCCGCATCGCTCCTCCCCGCCGCCGCCGCCAAGCGCCCCTTCGCCACCGACT
CTGCCTTCGACCCTTCTGAGGAAGGGCAACAACTCGCGCAGGTCAGTCTCTGCTCAGTGC
TCGCTCTGTCTGTCTCTTCTCCGGCAAGCGTACTGACGCGCGCGTGTGGTGACCAGGAGA
GCGCGGTGACCAAGAAGAACGGCGAGAGCCAGCAGCAGAAGCTGGAGTGCCCGCGGTGCA
GCTCCAGCGACACCAAGTTCTGCTACTACAACAACTACAGCATGGCACAGCCGCGCCACT
ACTGCCGCACATGCCGCCGCTACTGGACGCA

Homology of Contig U35_31812 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None