barSeed - Barley Seed Development Database

Probe CUST_35417_PI390587928

Source Contig U35_31814

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35417_PI390587928	Hv_44K_v2	ACCGAGCCTTTTCCTGCTAGCTTGCTCGATCGCCCGACCCGTATCTACAGTAGGTTGATG	97	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62436.1	1550	2e-24	1397 - 1456	100	60 / 60	minus	ABC09250 ABC09252 ABC53019
JLOC1	JLOC1_40863.1	1337	8e-25	92 - 151	100	60 / 60	plus
Harvest35	U35_31814	339	3e-25	98 - 157	100	60 / 60	plus

Contig Sequence (339 bp)

>U35_31814 339 Hv_44K_v2
CGTCTCCCGTCCTCTACCTCCAGTTTTCTTTCACACTCTCCTAGCGAGTAGCTAGCTACC
TCCCTCCCCACCATCCTCTACTGCGTCTGCCAGACAAACCGAGCCTTTTCCTGCTAGCTT
GCTCGATCGCCCGACCCGTATCTACAGTAGGTTGATGGGGCGCGCGCCGTGCTGCGACAG
GACCGGGCTGAAGAAGGGGCCGTGGACGCAGGAGGAGGACGAGAAGCTCGTCGCCTACAT
CAAGAAGCACGGCCAGGGCAACTGGCGCACCCTCCCCAAGAATGCCGGCCTGGAGCGGTG
CGGGAAGAGCTGCCGGCTGCGGTGGACCAACTACCTCCG

Homology of Contig U35_31814 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None