barSeed - Barley Seed Development Database

Probe CUST_35415_PI390587928

Source Contig U35_31815

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35415_PI390587928	Hv_44K_v2	GACAATATTTGCTCTCCATGGAGTTGGAGCCCAGATCAAGAAGCTCAAGGCCCGCGTCAC	468	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57686.1	1909	2e-24	1543 - 1602	100	60 / 60	minus	None
MLOC	MLOC_57686.2	1908	2e-24	1542 - 1601	100	60 / 60	minus	None
JLOC1	JLOC1_37420.1	2126	8e-25	528 - 587	100	60 / 60	plus
Harvest35	U35_31815	528	3e-25	469 - 528	100	60 / 60	plus

Contig Sequence (528 bp)

>U35_31815 528 Hv_44K_v2
ATCAACAGCTCCCTAGCAACAACCAACAACACAGGTACCACACACACACACACACGCACA
CACACCACGCTACTCTCAAGCAGTCAAGCTCACCACCATCCAACACCATCAACCATGGCA
CTTGTTGTGTAGCGGCTTCTTCATCTCGAGCAAGATGGGGACAGGAGCGTTGGGCTCCGT
CATCGTCAAGCTCGCCACCTTGCTCGGAGACGGGTACACGATGCTCAAGGGGACTCGCAA
GGACATCGCGTTCCTCGAGCGCGAGCTCCGCACGATGCAGATCCTGGTGAACATGCTGGC
GGGCATGGAGGGGCTGGACAAGCTGGCCATGGACTGCGAGGGCAGCATGCGCGAGCTCGG
CTACGCCATGGAGGAGTGCATCGACCGCTTCATGCTCCGCCTCGACGAGAACGACATGGA
GATGGAGGCCGCGCCATCGTTCCCGAGGAGCACCGCGCGACAGCTCAAGACAATATTTGC
TCTCCATGGAGTTGGAGCCCAGATCAAGAAGCTCAAGGCCCGCGTCAC

Homology of Contig U35_31815 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None