barSeed - Barley Seed Development Database

Probe CUST_35411_PI390587928

Source Contig U35_31817

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35411_PI390587928	Hv_44K_v2	TTCGTCTTCTCCGAAGACCAGAAGCTCGACTGGTGCAACATGCTGGCGCTCGGCGTGTCC	455	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365108	1288	2e-24	460 - 519	100	60 / 60	plus	None
MLOC	MLOC_55123.2	1646	2e-24	753 - 812	100	60 / 60	minus	None
MLOC	MLOC_55123.1	1609	2e-24	766 - 825	100	60 / 60	minus	None
JLOC1	JLOC1_35539.1	1554	8e-25	724 - 783	100	60 / 60	plus
Harvest35	U35_31817	580	3e-25	456 - 515	100	60 / 60	plus

Contig Sequence (580 bp)

>U35_31817 580 Hv_44K_v2
AGCGACCGGCAATGGCTTCTGCGGCCGTCTGCTCCCCTAAGCAGCAGCAGCAGCAGCGGC
GGCGGGATGAGGAGGGGGAGACGGATGGTGGGGTTGTGAAGATCGGGCGGGTGGACGACG
TGCAGGAGCTGCAGAAGGCGTGCGCGGGCGACGTGCCGGAGCGGTACCTCCGGGACGGCG
ACGACCGGCCGGGCGGCGCCAACGTCTGCGCGCACGCGGAGATCCCTGTCATCGATGCCG
GCGAGCTCCGGCGCGGCGGTGGCGGCGGGGACGAGCTGGAGAAGCTCAGGAGAGCCTGCG
AGGAGTGGGGCTTCTTCCAGGTCGTGAACCATGGCATCGACGGCGAGCTGCTGGACGAGA
TGGAGAGGTTGTCGAGGGAGTTCTTCATGCTGCCGCTGGAGGAGAAGGAGCGCTACCCCA
TGGCGCCGGGCGGCATCCAGGGCTACGGCCACGCCTTCGTCTTCTCCGAAGACCAGAAGC
TCGACTGGTGCAACATGCTGGCGCTCGGCGTGTCCCCGGCGTTCATCCGGCAGCCCAAAC
TCTGGCCGACCACGCCGGCCGCCTTCACCGACACGCTGGA

Homology of Contig U35_31817 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g70930.1	367	1e-67	protein\|leucoanthocyanidin dioxygenase, putative, expressed
Brachypodium v1_2	Bradi2g60070.1	368	3e-74
Arabidopsis v10	AT3G21420.1	364	2e-51	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr3:7541579-7543221 FORWARD LENGTH=364