- Probe CUST_35409_PI390587928
- Source Contig U35_31818
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35409_PI390587928 | Hv_44K_v2 | TCTTCAACTGCACCGAGAACGCCGAGGACGGCAAGACGTACACCTACTTCGCGGACCTGC | 455 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.827 | 3.861 | 2.074 | 0.417 | 0.131 | 0.115 |
| Raw | 212.407 | 333.504 | 149.059 | 50.564 | 3.648 | 2.813 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_18560.1 | 1601 | 2e-24 | 1454 - 1513 | 100 | 60 / 60 | minus | ABC12734 |
| MLOC | MLOC_18559.1 | 5932 | 2e-24 | 5219 - 5278 | 100 | 60 / 60 | minus | ABC12734 |
| JLOC1 | JLOC1_12844.1 | 1767 | 8e-25 | 265 - 324 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_31818 | 544 | 3e-25 | 456 - 515 | 100 | 60 / 60 | plus |
Contig Sequence (544 bp)
>U35_31818 544 Hv_44K_v2 ATTGCAAACAACCCAAGTTCGAGCAATGTCGTCGCCGCCGTCGTGCTCGTCGTACCTCGG GAGGCCGACCTACTGCGCCGTGGCACTCGTCCTCCTCCTCACCCTGCTCTGCATCACCTT CCCCGCCTACCTGCGCAACCCGGTCAGCGTCGCGAGCTGCTTCACGGGAGCCGACGTCCG TGCCGCCGCCGCCGCCGCCCAGCCAGCAGCGTCGGCGTCGGCGTCGTTGGTGGCGGACGA CGGGGGTCAGCTCAGCATCCTGGTCGGCGTGCACACGATGCCCAAGAAGCACTCCCGGCG GCACCTGATCCGGATGGCGTACGCGCTGCAGCAGACGGCGGCGCTCCGGGGCGCCGCGCG GGTAGACGTCCGGTTCGCGCTCTGCGCGCGGCCGATGCCGCCCGAGCACGCCGCGTTCGT GGCGCTGGAGCGCCGCGCCTACGGCGACGTGCTGCTCTTCAACTGCACCGAGAACGCCGA GGACGGCAAGACGTACACCTACTTCGCGGACCTGCCGGCCATGCTCGGGGGCGCCGGCGG CGGC
Homology of Contig U35_31818 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |