- Probe CUST_35407_PI390587928
- Source Contig U35_31819
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_35407_PI390587928 | Hv_44K_v2 | TTGGTGGCAGAGATGAAGGATGAAGCATCTGGCTCAGCCAAAGAAGGCAAGCAAGTAGCC | 339 | GeneList: saddlebrown MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.188 | 0.233 | 0.695 | 1.899 | 1.387 | 1.714 |
Raw | 47.982 | 93.777 | 253.927 | 1100.645 | 276.730 | 374.736 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK370302 | 1019 | 2e-24 | 316 - 375 | 100 | 60 / 60 | plus | ABC09191 |
MLOC | MLOC_63572.2 | 910 | 2e-24 | 539 - 598 | 100 | 60 / 60 | plus | ABC09191 |
MLOC | MLOC_63572.1 | 1379 | 2e-24 | 404 - 463 | 100 | 60 / 60 | plus | ABC09191 |
MLOC | MLOC_63574.1 | 3355 | 2e-24 | 439 - 498 | 100 | 60 / 60 | plus | ABC09191 ABC48041 |
JLOC1 | JLOC1_41656.1 | 4054 | 8e-25 | 3781 - 3840 | 100 | 60 / 60 | minus | |
JLOC1 | JLOC1_41655.2 | 4257 | 8e-25 | 303 - 362 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_41655.1 | 4368 | 8e-25 | 414 - 473 | 100 | 60 / 60 | plus | |
Harvest21 | ABC09192 | 538 | 3e-25 | 306 - 365 | 100 | 60 / 60 | plus | |
Harvest21 | ABC09191 | 943 | 3e-25 | 318 - 377 | 100 | 60 / 60 | plus | ABC09191 |
Harvest35 | U35_31819 | 550 | 3e-25 | 340 - 399 | 100 | 60 / 60 | plus | |
Harvest35 | U35_17942 | 1147 | 3e-25 | 319 - 378 | 100 | 60 / 60 | plus |
Contig Sequence (550 bp)
>U35_31819 550 Hv_44K_v2 AACAAGAACAAGAATTCTATCCCCCGGAACCGGAACAACAGGCGGAGGACAAGGAGAGAG CGAGGAGCCGATCCGTCCCGTCCCGTCCCGTCCCGTCCGATCGATCGCCCGGCGGCTCTC CGGCTAGAAATGGCGCAAGAGAGTTGGAAAGAGGCAGAGGATACGGGTGTCCACGCACCC GAGGCCCCGATACTGTGCGTCAACAACTGCGGCTTCTTTGGCAACCGGATGACAGAGAAC ATGTGCTCAAAGTGTTACCGAGACACTGCCAAGGCCAAGAGGATGGCCACTCTAGTCGAG AACAAAACTGCTGCTGCTGTTGCATCGTCACCCACACCATTGGTGGCAGAGATGAAGGAT GAAGCATCTGGCTCAGCCAAAGAAGGCAAGCAAGTAGCCGAGGAGGAGGCGCCCAAGCCA CCGAGCAACCGCTGCCTGTCGTGCCGGAAGAAGGTCGGGCTAACGGGGTTCAAGTGTCGC TGCGGAGACACCTTCTGCTCGATGCACCGGTACGCCGACGCGCACGATTGGCAGTTCGAC TACAAGCAGG
Homology of Contig U35_31819 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os03g57890.1 | 161 | 4e-76 | protein|zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed |
Brachypodium v1_2 | Bradi1g06040.1 | 156 | 8e-74 | |
Arabidopsis v10 | None |