barSeed - Barley Seed Development Database

Probe CUST_35402_PI390587928

Source Contig U35_29500

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35402_PI390587928	Hv_44K_v2	GGTCATTAGGTGACAAAGATCTAGGACTTGAGATTTGGAGGAAGATTTTGAACCGCTAAA	605	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.802	2.971	3.117	1.268	0.428	0.462
Raw	15.172	81.325	80.800	50.196	4.786	6.082

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15798.1	1294	2e-23	383 - 440	100	58 / 58	minus	ABC28808
Harvest21	ABC28808	679	3e-25	606 - 665	100	60 / 60	plus	ABC28808
Harvest35	U35_29500	679	3e-25	606 - 665	100	60 / 60	plus

Contig Sequence (679 bp)

>U35_29500 679 Hv_44K_v2
CTTGAATGCAATGGTATGCTTCGGGTCATTGACGGCATTTGCCACCATAATTGGCCTTAG
TGTGTCGCTTGCAGTCTTAGGACCTATCCAGAAGGATTCAATGGCAGCACACGACATGGC
TCTTGCTGCTACTGGTCTGCAGGTCTTTTCTCAGTTCATACCCTACATCAGCGTGTACGG
CCTTTTCCGTCCATCTGCCAATCCACCACCGATGAATATTCGGAACATGAGACCGCTGCT
AATCTATTCAAGGGCATCAAACTTCATCATCTCTCTCTTCTGGGCTATGTATGCCGTTCT
TACGTATCAGCACACAATGTTTGAGGTCGCTAATGTTTCCAGCACTATTTTGGGCTTCGG
ATCCTTGTGCCTTCACCTAGTCTATGCGCTCGGCCCGGATGCGGTGTAAAGTCAGAATGA
ATTCATGAAGGCTGATGACAAATGAAAGTGAATGACGATGTAGCAGTTCTTGAGCGGTGA
AGCTGACGCGAATGTCTCGTGAAGTCGTGACTCAGAACTAGAGCGTGCTGTGTTTTCTTA
ACTGGAGAATGTCACTGTTCAACAAAGAATCGTGGTGCATGATCGATTNTGGGGATTTGT
TGCTAGGTCATTAGGTGACAAAGATCTAGGACTTGAGATTTGGAGGAAGATTTTGAACCG
CTAAAAAAAAAAAAAAAAA

Homology of Contig U35_29500 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None