barSeed - Barley Seed Development Database

Probe CUST_3539_PI390587928

Source Contig U35_20493

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3539_PI390587928	Hv_44K_v2	TACTATGTTAATCAGTAGGGGTGAGGCAATCTGAATCTTTCATCAGGGAATAGATTTCCC	943	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.665	6.838	1.548	0.522	0.259	0.231
Raw	178.504	313.534	56.242	33.029	3.030	3.284

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353813	1787	2e-24	1717 - 1776	100	60 / 60	plus	ABC39095
JLOC1	JLOC1_27752.1	1076	1e-22	952 - 1011	98	59 / 60	plus
Harvest21	ABC39095	428	3e-25	29 - 88	100	60 / 60	minus	ABC39095
Harvest35	U35_20493	1108	3e-25	944 - 1003	100	60 / 60	plus

Contig Sequence (1108 bp)

>U35_20493 1108 Hv_44K_v2
GGCGGACGGTCGGCAAGAAGTGGCGCTGCTCCAGGGAGGCGTACCCAGACTCCAAGTACT
GCGAGAAGCACATGCACCGCGGCAAGAACCGTTCAAGAAAGCCTGTGGAAATGTCCTTGG
CCACGCCCCCGCCGCCGCCTTCCTCCTCGGCCTCCTCCTCCTCCTCCAACGTCCACTCCG
ACGTCACCACCGACAGGGACCACCAGCACCACCAACACCACGGCAGCGCCGGCGGCCACG
GCCAGTGGCAGTTCAAGCAGCTCGGCGGCATGGAGCCGAAGCAGCACAACCCCACGTCGC
TCTTCCCCGGGTGCGGCGGCTACGGTAACAACGCAGCGTACGCCATCGACCTGTCCGGCA
AAGAACAGGCCGAGGAGAAGGAGAGGCGGCAGCAGCAGCAGCACTGCTTCCTGCTGGGCG
CTGACCTGAGGCTCGACAAGCCGTCGTCGGGGCACGGCGACTCCGCCGACCAGAAGCCTC
TCCGGCCGTTCTTCGACGAGTGGCCGCACGAGAAGACCGGGAACAAGGGNTCATGGATGG
GGCTCGAGGGCGAGACCCAGCTCTCCATCTCCATCCCCATGACCGCCAACGACCTCCCCA
TCACCACCACCTCCCGTTACCACCACGGTGAATGATCCAAGTCCCAACGAGAAGAAGTAC
GAAGTGTTGGATTGCTGCAACGAGAGGCCATCTCCACGAACACGCACGTACGGAGCGAAT
CGATTGGTGCTTTCCCGGCGTGCTACTCGAGCTGCATGCCGACGTGCCCTGGACCAGCTA
TCTCGAGGCATGCATGCACAGTTCTAGCGCTGAAGATGTTGAAACGCCGGAACCTACCAC
GACCATCATTTTCATTTCTTCTTCCTTCCTTCTCTTTATTAATTTGTAATGTTTGCTTTG
GTCGAGTGTAACATTTCCACGACATCCATGGGGGTGGCGAGGCTACTATGTTAATCAGTA
GGGGTGAGGCAATCTGAATCTTTCATCAGGGAATAGATTTCCCTCTTTCCTTGCAAAAAA
AAAAAAAAATCATGAGATGCTAGCTTGCGAGCTGAGCTGAGCTGAGCCGAGCGTGTTCGC
TTTTGTTATCGTCCCAAAAAAAAAAAAA

Homology of Contig U35_20493 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None