- Probe CUST_35394_PI390587928
- Source Contig U35_29509
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35394_PI390587928 | Hv_44K_v2 | CGATGTTCAGAACTTTGAGTCACAAAGTAGCACTCAGTCAAGTGATGCTCTGAACTTTGA | 643 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.395 | 1.729 | 1.643 | 1.040 | 0.386 | 0.286 |
| Raw | 30.259 | 60.183 | 48.821 | 50.059 | 4.924 | 2.886 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61355.2 | 2438 | 2e-24 | 2002 - 2061 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_61356.4 | 2475 | 2e-24 | 609 - 668 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_61356.5 | 2607 | 2e-24 | 609 - 668 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_61356.3 | 2713 | 2e-24 | 643 - 702 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_61356.6 | 808 | 2e-24 | 157 - 216 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_61355.1 | 3739 | 2e-24 | 2004 - 2063 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_61356.1 | 2511 | 2e-24 | 751 - 810 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_61356.2 | 2515 | 2e-24 | 751 - 810 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_40092.2 | 2466 | 8e-25 | 1696 - 1755 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40092.1 | 2407 | 8e-25 | 1637 - 1696 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28821 | 706 | 3e-25 | 644 - 703 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29509 | 706 | 3e-25 | 644 - 703 | 100 | 60 / 60 | plus |
Contig Sequence (706 bp)
>U35_29509 706 Hv_44K_v2 CAGAGTTCCAACAGATATGTGAGAAATATTTTGAATGGACCCCAGAGAAGACTGATGAAT ACATCCTTCCGAAGATAGCTGAGAGAGAACTTCGAAGGTTCTCAAATCTTCGTTCGACAT CTTCAGCTCTAGGAATGAAACCTTCACTGGGTGAGATTCCAGTACCATGCCCTGTATTGG CAATTACGAAGCAACGTAAAGTTCATGGGAGTGAGTATTATGAGGTTTCATGGAGAAACA TGCATGGATTCCAGTCTTCAGTTGTTCCAGGGGATCTCATCCGAAGTGCATGCCCAGAAA AAATAACCGAGTTTCTGGAAAAGAAGGATGAAGAGAAGAAGCAAAAGAGGAAAACCAGGC CAAAGAAATCGGCACAAGCTGCAGTTAAAGATGTTGATGCGCGGCTCCAAGATTTGATGC TTGATATTGAGTCTGAATACGCCACGTTTCCGCCTGCAAGCAATTGTCCTGAGACAGGAG ATGTGCACCGCGTGGTACCTAGCATGGATATAGTTGATCTGTCTTCTCCATCTCCACCCC TCCGGGCTTGCAAGTCCCAAAAGTTCATCGGATCAACCGCAGCTGCGATTAATGGGATTG ATTTGCTGAGCGGTATGGAGTCACAAAGTAGCACCCAGTCAAGCGATGTTCAGAACTTTG AGTCACAAAGTAGCACTCAGTCAAGTGATGCTCTGAACTTTGAGTC
Homology of Contig U35_29509 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g01130.1 | 642 | 6e-66 | protein|flap endonuclease, putative, expressed |
| Brachypodium v1_2 | Bradi3g12930.1 | 707 | 1e-101 | |
| Arabidopsis v10 | None |