barSeed - Barley Seed Development Database

Probe CUST_3536_PI390587928

Source Contig U35_20496

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3536_PI390587928	Hv_44K_v2	GCCCTATGTTTTATGCTATGGTTTTGGTCGTTTAAAGTGTCTATATGATCCAAGTTTGTA	897	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36757.1	1667	2e-24	46 - 105	100	60 / 60	minus	ABC12581
JLOC1	JLOC1_23711.1	1843	8e-25	1633 - 1692	100	60 / 60	plus
Harvest21	ABC12581	975	3e-25	898 - 957	100	60 / 60	plus	ABC12581
Harvest35	U35_20496	975	3e-25	898 - 957	100	60 / 60	plus

Contig Sequence (975 bp)

>U35_20496 975 Hv_44K_v2
GATGACGATCAGTTAGCCCCCCAAAGATTTAGGGAACTAGTGCCGCATCATTCTACATCC
AGTAGGCTAGAAGCTGAAGGAAGACATGAAGCTGGAACATCAGCTGGCTTGCCTCGAGAT
TTCTCTAATTCAGTTACTGATGGTCAACTGATTAAACAAGACAGTGGTTCCAGTGTGTGT
GAACCACCTACAAGCATCCTTAGTTGGAATGGTTTTAAGTTGCCAGGGATCCGGCGCTCG
ATGTCCAAGAGTGAGATAGCTAACCAAATTGGGCACCACATCTACAGACAAATGTATTCA
GGGAACCTACCTGCAGCTGATGGTGGCGCTGGCACATCAGGTAAACTGGCCTTAGACGAC
ATCACCCGGTACCTCCTGAACGACTCTCAGATCATCGACGGTTGCCATGATTCCACGGGT
AAATTAGCATTTGATGAGCTGACCCGGCAACTTCTAAATGACTCCCAAATCACTATCGCT
GCTGATGAGAGGATGCTTATGTCAAGGGTCAATTCTCTATGCTCATTGATCCACAAAGAT
TCAGGCACAGGCCAGATAAACCCTGGTGTTCATAGTAATAATGAGATTTATGAGAGAAAG
CCCCAACCTTATGCGCCTCCGGTTGGAGGAGACAGTGGCAATGACTCATTGCCTCCAAGA
CAAGAACCATTTGGGGACCTGCTTACGCATCTGCCGCGCATCTCATCATTTCCTCATTTC
TTGTGAGTTTGGTTCTGAGTGAGACAAAATGTGCAGTGGGGGGCTGTAGGTTGATAAACT
GTTTGTGTGTAGAATTTTTGCCGGGAATCAACGTGACTCCTTCATTTCTTCTTTCTTGTA
TGTACAGTATCAGGTAGGATAATTTTAGGCAAGCCCTTTTGGCTCCATAACACGACTGCC
CTATGTTTTATGCTATGGTTTTGGTCGTTTAAAGTGTCTATATGATCCAAGTTTGTATAA
AAAAAAAAAAAAAAA

Homology of Contig U35_20496 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g04160.2	487	1e-103	protein\|expressed protein
Brachypodium v1_2	Bradi4g08640.1	525	2e-102
Arabidopsis v10	None