barSeed - Barley Seed Development Database

Probe CUST_35369_PI390587928

Source Contig U35_43804

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35369_PI390587928	Hv_44K_v2	ACCGCCAAGATCTGCCACAACTGATCGTACGTGGGGTTGATGCTTGCCACCGGCGGTAAA	235	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.914	5.560	1.470	0.684	0.233	0.257
Raw	2286.297	2673.739	580.852	459.518	48.993	62.356

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356015	2835	2e-24	35 - 94	100	60 / 60	plus	ABC05026 ABC05028 ABC18723
MLOC	AK360741	659	2e-24	376 - 435	100	60 / 60	plus	ABC05026 ABC05028
MLOC	MLOC_80208.1	505	2e-24	184 - 243	100	60 / 60	plus	ABC05026 ABC05028
JLOC1	JLOC1_53414.1	555	8e-25	166 - 225	100	60 / 60	plus
Harvest21	ABC05028	315	3e-25	168 - 227	100	60 / 60	minus	ABC05028
Harvest21	ABC05027	411	3e-25	174 - 233	100	60 / 60	minus
Harvest21	ABC05026	666	3e-25	371 - 430	100	60 / 60	plus	ABC05026
Harvest35	U35_43804	295	3e-25	236 - 295	100	60 / 60	plus
Harvest35	U35_33012	757	3e-25	535 - 594	100	60 / 60	minus
Harvest35	U35_16003	655	3e-25	374 - 433	100	60 / 60	plus

Contig Sequence (295 bp)

>U35_43804 295 Hv_44K_v2
CAGATCATCATCATCAAGCACGCCCAGCGCAGAGTGATCGTCCAGAGAACTCCGCAGCTC
CGTCCCGATCGATGGCGTCGCTCACCATGATGGCGTCCCTCGCCGCGCCGTGGTGTTCGC
CGCCGCCGCCGCGGCCGTCTCGGCCATCGGCACGGCGGCGTTCGCCGAGTCGGACGTCAA
GAAGGGCACCCCAGAGGCCAAGAAGAAGTACGCCCCCGTCTGCATCACCATGCCCACCGC
CAAGATCTGCCACAACTGATCGTACGTGGGGTTGATGCTTGCCACCGGCGGTAAA

Homology of Contig U35_43804 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None