barSeed - Barley Seed Development Database

Probe CUST_35366_PI390587928

Source Contig U35_43806

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35366_PI390587928	Hv_44K_v2	AGTTTTATGGCTATTTGCTGACCAACAACAATGCATGCTGTTTGACAATCCAACCAGGGA	259	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15202.2	2413	2e-24	596 - 655	100	60 / 60	plus	ABC02665
Harvest21	ABC40903	467	3e-25	260 - 319	100	60 / 60	plus
Harvest35	U35_43806	467	3e-25	260 - 319	100	60 / 60	plus

Contig Sequence (467 bp)

>U35_43806 467 Hv_44K_v2
AACTGAAGGGCGGAAGCTTACCTGGGGGCAGAGGATATCGGCCGCCATCGGTGTCGCCAA
GGGCATCCAGTTCTTGCATGGAGGGATCATACCCGGTCTATTCGGGAACAATTTGAGGAT
CAGCAACATTCTTCTAGACCAGAACCATGTCGCCAAAATAGGCAGCTACAATATCCCAAT
CCTAGGAGAGGCTGCAAAACCTGAGGTAGATCAGCGAAATACTAACTTATGATGTGAAAC
ATCCAGCTACACTTTGTAGAGTTTTATGGCTATTTGCTGACCAACAACAATGCATGCTGT
TTGACAATCCAACCAGGGAGGGGCTGGAAGCAGACACCAAACTGATAGCACGATGCTCAG
CGACAAGATCGACATATTCGATTTCGGAGTGATCCTGCTCGAGCTTGTGTCTGGGAAGCC
GATCACATCGATATATGAGGTGGAGATAATGAAAGAACTGCTGCTGT

Homology of Contig U35_43806 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g06100.1	799	6e-59
Arabidopsis v10	None