barSeed - Barley Seed Development Database

Probe CUST_35363_PI390587928

Source Contig U35_43808

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35363_PI390587928	Hv_44K_v2	AGTCCCTATCCTCACCGGACTTAGCTACATGTACATGCTAGACGTCCACAACAAGCAGGG	334	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59726.1	1745	2e-24	592 - 651	100	60 / 60	plus	ABC04319 ABC04320 ABC04321
JLOC1	JLOC1_38883.1	1619	8e-25	525 - 584	100	60 / 60	plus
Harvest21	ABC04320	1536	3e-25	454 - 513	100	60 / 60	plus	ABC04320
Harvest35	U35_43808	394	3e-25	335 - 394	100	60 / 60	plus
Harvest35	U35_14730	1659	3e-25	508 - 567	100	60 / 60	plus

Contig Sequence (394 bp)

>U35_43808 394 Hv_44K_v2
AAACAGCAATGGCCAATCACCTCAAGCGTCCCTTAGTCCAGCAATTCTTTCTGCTCACTT
CCGTTGCTGCAATCGTAGCAGGCCCCGCTGAGCCACACCTGTCCTATAAGATACACCAGC
ATTCTTCCTCGTACCCACAGCCACGTGACTTCCCAAGCGAGCAGCTCTACCATGCATACT
TCGCCATCCAGCGATTCAAGAACACCATCACCTCCGACCCCAAAAACGTAACCAGCACCT
GGACAGGCCACGACATTTGCGCCACGACGAGCTACCTCGGCTTCAACTGCGGGGCACCGC
ATGGACAAGCTTCCTCCAACAACTTCGGCGGCGAAGTCCCTATCCTCACCGGACTTAGCT
ACATGTACATGCTAGACGTCCACAACAAGCAGGG

Homology of Contig U35_43808 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None