barSeed - Barley Seed Development Database

Probe CUST_35361_PI390587928

Source Contig U35_29516

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35361_PI390587928	Hv_44K_v2	CGCCATGCGCGAGGTGCGGAGGCTCAACGACGAGGAGGGATTCTGCGTCTCCCTCATGGT	377	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.052	2.160	1.463	0.535	0.577	0.514
Raw	24.463	37.526	23.860	13.183	2.671	3.358

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375629	2062	2e-24	433 - 492	100	60 / 60	plus	None
MLOC	MLOC_37559.3	1541	2e-24	218 - 277	100	60 / 60	plus	None
MLOC	MLOC_37559.1	1867	2e-24	233 - 292	100	60 / 60	plus	None
MLOC	MLOC_37559.2	1870	2e-24	233 - 292	100	60 / 60	plus	None
JLOC1	JLOC1_24325.4	1586	8e-25	29 - 88	100	60 / 60	plus
JLOC1	JLOC1_24325.3	1877	8e-25	198 - 257	100	60 / 60	plus
JLOC1	JLOC1_24325.2	1809	8e-25	219 - 278	100	60 / 60	plus
JLOC1	JLOC1_24325.1	1895	8e-25	219 - 278	100	60 / 60	plus
Harvest21	ABC28828	437	3e-25	378 - 437	100	60 / 60	plus
Harvest35	U35_29516	437	3e-25	378 - 437	100	60 / 60	plus

Contig Sequence (437 bp)

>U35_29516 437 Hv_44K_v2
TCCCTCCCTCGCATCGTCCGCCCCACCACCATCGCCGCCGCACCCGCCGCCGCCGCCGCC
GCCTCGGGAACCCTAGCCCCGATGGCCACCTCCGCCGCCACCAGCTCGTTCCCCTCCTAC
CTCTTCCCTGCCCCCGCCCCCCGCCGCAGCGGGGCCCGCCCGGCCCGGGCGTCGGCGTCG
GCGGCGTCGGCGGAGGGGGTGATGGACGTGGTGTCGGAGGCGGAGCTCAAGGAGAAGGGG
TTCATGGGCATGCGGAAGACGAAGCTCGTGTGCACGGTGGGCCCGGCGTGCGTGGACGCG
CTGCCGGCGCTGGCGCGCGGCGGGATGGGCGTGGCGCGGGTCAACCTCTGCCACGGGGGC
CGCGACTGGCACCGCGCCGCCATGCGCGAGGTGCGGAGGCTCAACGACGAGGAGGGATTC
TGCGTCTCCCTCATGGT

Homology of Contig U35_29516 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None