barSeed - Barley Seed Development Database

Probe CUST_3535_PI390587928

Source Contig U35_20497

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3535_PI390587928	Hv_44K_v2	TTAAGATTCCTTTCTTTTTAATCATGCCTTGTTGCCTCTATGCAAGCTGTGATAATCGAA	1119	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56963.1	5173	7e-23	5110 - 5166	100	57 / 57	plus	ABC17684
MLOC	MLOC_56963.2	2504	7e-23	2435 - 2491	100	57 / 57	plus	ABC17684
JLOC1	JLOC1_36868.2	2494	4e-23	2227 - 2283	100	57 / 57	plus
JLOC1	JLOC1_36868.1	3267	4e-23	3000 - 3056	100	57 / 57	plus
Harvest35	U35_20497	1182	3e-25	1120 - 1179	100	60 / 60	plus

Contig Sequence (1182 bp)

>U35_20497 1182 Hv_44K_v2
GTGAGTGCATTGCTGAGTCCAACTCGCAGCCCAAGAAGAAGAAGAAGGCCAAGAGGCCGA
CCCCTCCAGTCACCTCTGACGCTGAGGGCGACGCGGACTACGAGGAAGGCGGTGGCGCCG
CGCTCCCGGCCGGCGAGGTGCGGAGGTGCACGCATTGCCAGATCGAGAAGACGCCGCAGT
GGCGTGCGGGGCCTCTGGGGCCCAAGACGCTCTGCAACGCCTGTGGCGTGCGCTACAAGT
CCGGCCGCCTCTTTCCGGAGTACCGCCCGGCGGCCAGCCCCACCTTCGTGCCAGCCATCC
ATTCCAACTCCCACAAGAAGGTGGTGGAGATGCGCCAGAAGGTTGAACCCAAGGGCGACG
ACCTCCTGCAGTTTATCCGCCGCCGGGATTGAGCTCCCCGCACCGGCATCGGTCGCCGGA
CGGTCGGTCTCGTCCCCCTTAGCTATTATATATGTATACATGCTAGTATGTATGCATTGC
ATGCTTGCTTCCAAGTAGTCAGTCAGTCATCGTCGTCCATCGTCATGGACAGTAGTGCTC
AGCATTGCCTTCATGCATCCACCCACCACCATCATCGCCATGCATCGGTTTCAGTCAGCA
TCGTTAGTTCAATAGGGCTTTTTCTTTTGGGTTTATTCCACCTCTTTTTTCTTTGTCTAT
TACTTAATTGGTTCCCCCTAAGAAGATTTTTTGTTTGTATAGAGGAGGGTGAGTGAGGAG
GGCAGGAGAAATAGATGAATCAATCACAGAGTGGTTGTTGCATTGCAGTTGCTTGCAAAT
TAGGTACTAGGTGAGAAGGAGAGCTAAACCAGCAGCAGCAGAGGCAGAGGCAGCTAGGCA
GTCAATTAGGAAAGTTGGTGTGCTCTGAGCAAGAGTGAAGTGAAGGAGATTTGTTGGTTT
GCTAAGTTAGAAAAACAAATGTGTCAAGTAGCCATCAGGAAGGTTGAAGTAGGGGGATCA
CCAATCATAGTCAGCAGTTTATATTGGAGCTTGGTGTACTGAACTCTGAATATTCTTTTT
GCAGTTCATCTATGTTTAGGGATTTATAAGTGGTGTCTTGTGTTTTATACTACTACTAGT
GTTACCTTTTTTCTTTTTCTCTTACGTAGTAGCCATTAATTAAGATTCCTTTCTTTTTAA
TCATGCCTTGTTGCCTCTATGCAAGCTGTGATAATCGAATGA

Homology of Contig U35_20497 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g54720.1	417	6e-51
Arabidopsis v10	None