barSeed - Barley Seed Development Database

Probe CUST_3534_PI390587928

Source Contig U35_20498

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3534_PI390587928	Hv_44K_v2	CTTGTACTGGCTAGATTGATTCTGAACTTCTTTCAAAGAAGGAATGGATTTTTAACTCTG	1739	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.889	1.732	1.234	0.725	0.299	0.380
Raw	4015.133	5648.970	3629.070	3336.177	481.417	668.275

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45226.1	2151	2e-24	40 - 99	100	60 / 60	minus	ABC16491
JLOC1	JLOC1_29362.1	2127	8e-25	2053 - 2112	100	60 / 60	plus
Harvest35	U35_20498	1817	3e-25	1740 - 1799	100	60 / 60	plus

Contig Sequence (1817 bp)

>U35_20498 1817 Hv_44K_v2
GGTGGTGCCTCGTCGTGGGCTCCAAGATCCGGGCCAAGGTCGGGCCCGAGCTGCAGCTCA
AGACCTTCCCCGTGCAGCGACGCGTCGACTTCGTCGTCGACGGCGTCTGGGCGCTCAAGT
TCCTGCACCCCGACGGCTACGGCGACTTCAACGCCAAGTACAATAGCTGTCTCTTCGAGA
ACAGCTACGGCGTCGAGGCCACCGACGAGGGCCGCGCCAAGGTGTTTGGGAAGGACTTTG
CTGCGTGGGCGCGCCCAGAGTGTGGCGATGAGTCCATCTGGGAGGACGCGAGCGATGCTT
TCTCGCCAGGCCCCAAGGGCAGCCCGATGCCTGCACGGAGCCCGATGTTGAGGCCCCTGA
TGGAGGATTTCAGGGAGTTTGAGGAGCCTGTGGAGCAGGGTGATGGTAATATTCAGAGCC
TTGCTCTGGGTGCTCTTGACAACAGCTTCCTTGTAGGTGATTCAGGTATCCACGTGGTGA
AGAACTTTGAGCACGGCATACACGGGAAGGGTGTGTCTGTGAAGATATCTGGAGGGGGAA
CACACTTCACCACACCAAAGAAAGCACTTCTGATGCGTGCCGAGACAAACATGCTCCTGA
TGAGCCCAGCAACTGATGGGAAGCCACATGCGAAGGGGGTACACCAGCTTGACATTGAGA
CTGGGAAGGTTGTCTCCCAGTGGAAGTTTGGGAAGGATGGTACTGACATCAACATGAGGG
ATATCACTAACGATAGCAAGGGCGCACAGATGGATGCTTCGGAATCCACATTCCTGGGAC
TAGATGACAACCGACTGTGCCGGTGGGATATGAGGGATCGACATGGGATTGTGCAGAACT
TGGCTAGTTCGATGGAGTCGCCAGTGTTGGAATGGACCCAGGGGCATCAGTTCTCCAGGG
GAACAAACTTCCAGTGCTTTGCATCAACTGGTGATGGGTCCATCGTGGTAGGCTCTTTGG
ACGGGAAAATTCGTTTGTACTCAAAGAGCTCTATGAGGATGGCGAAGACGGCCTTCCCAG
GGCTGGGTTCGCCGATTACTCATGTGGACGTGACGTACGATGGGAAGTGGATACTAGGAA
CCACTGATACCTACCTGATACTCATTTGCACCATTTTCATTGACAAGGATGGGAAGGAGA
AGACAGGGTTTGGTGGAAGAATGGGGAACCGAATTGCTGCACCAAGACTGCTCAAGCTCA
GCCCACTCCACTCTCATCTTGCAGGGGACAACAGCAAGTTCCGTGAGGGCAGGTTTTCAT
GGGTCACAGATAACGGCAAGCAGGAGAGGCATCTGGTGACGACCGTTGGGAGGTACAGCG
TGGTGTGGAACTTCCTCCAGGTGAAGAACAGCCACCACGAGTGCTACCAGAACCAGGAGG
GGCTCAAGAGCTGCTACTGCTACAAGGTGATCCCCAAGGACGAGTCCATCGTCGCCAGCC
GCTTCATGCACGAGAAGTACGACGTGAGCGACTGCCCCGAGGCACCGCTGGTCGTCGCGA
CGCCCATGAAGGTCACCTCCTTCAGCGTGTCTAGCCAGCGCTAGCTCCGAGCTGCCGCCT
CAGCGTGTTTTTTTTTCCTTCCAGTTTGGTTGTTGGTCTCCGTGCTGTCATGTAACTTCT
TGACCTGCGGATCTGTAGACTTCCAAGTGTGATGATGACTATCTATATCTAGTCATGGCT
TGTTACAGGATTTATGATTACATGTGGATTGCTAGCAAACTTATCTTACAGAGTGGTGAC
TTGTACTGGCTAGATTGATTCTGAACTTCTTTCAAAGAAGGAATGGATTTTTAACTCTGC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_20498 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g08190.1	650	protein\|CYPRO4, putative, expressed
Brachypodium v1_2	Bradi3g05830.1	648
Arabidopsis v10	AT4G33400.1	645	Vacuolar import/degradation, Vid27-related protein \| chr4:16078189-16080410 REVERSE LENGTH=645