barSeed - Barley Seed Development Database

Probe CUST_35342_PI390587928

Source Contig U35_31839

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35342_PI390587928	Hv_44K_v2	TACATCCATCACTTCCCCACGGATAGTCAGCCATGGATAAGGCATCCATTGCCGTCCTCT	29	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369081	1750	2e-24	31 - 90	100	60 / 60	plus	ABC14663
MLOC	MLOC_74232.1	2049	7e-23	243 - 302	98	59 / 60	plus	ABC14663
JLOC1	JLOC1_49463.1	1925	4e-23	96 - 155	98	59 / 60	plus
Harvest21	ABC20436	814	3e-25	10 - 69	100	60 / 60	plus
Harvest35	U35_31839	545	3e-25	30 - 89	100	60 / 60	plus
Harvest35	U35_19699	870	3e-25	64 - 123	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_31839 545 Hv_44K_v2
AATCAGTCTGCGAGTTCGAGACACATCAGTACATCCATCACTTCCCCACGGATAGTCAGC
CATGGATAAGGCATCCATTGCCGTCCTCTCCGTGGCCTTCGCCAACCGGCCCCAGGTCCC
CTCGCAGATGCTCGTGTCCTACGGCGGCACCTCGCTCGTCAGCTCCAGCTACGGCCCGCA
CTGGCGCAACCTCCGCCGCGTCGCCGCCGTGCGCCTGCTCTCCGCGCATCGCGTCGCCGG
CATGTCGGGCGTCATCGCCGCCGAGGTGCGCGCCATGGCGCGCCGTCTGTACCGCGCCGC
CGCGGCGTCCCCCGGCGGCGCCGCGCGCGTGGAGCTCAAGCGGAGCCTGTTCGAGCTCTC
CCTGAGCGTGCTCATGGAGACTATCGCGCGGACCAAGGGCACCCGCTCGGAGGCGGACGC
CGACACGGACATGTCGCTGGAGGCGCAGGAGTTCAAGCAGGTGGTGGACGAGATCATCCC
GCTCATCGGCGCGGCCAACCTGTGGGACTACCTGCCGGTGATGCGGTGGTTCGACGTGTC
CGGCG

Homology of Contig U35_31839 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None