barSeed - Barley Seed Development Database

Probe CUST_35330_PI390587928

Source Contig U35_29522

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35330_PI390587928	Hv_44K_v2	CATTGATGTTGTTTAGTACTCCCTCCGTTTTATAATATAAGGCCTTGTTTGGTTCCAAAA	96	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73682.1	380	6e-24	5 - 63	100	59 / 59	minus	ABC19503 ABC28834
MLOC	AK360522	511	3e-22	456 - 511	100	56 / 56	plus	ABC19503 ABC28834
JLOC1	JLOC1_49057.1	361	3e-24	16 - 74	100	59 / 59	minus
Harvest21	ABC28834	169	3e-25	97 - 156	100	60 / 60	plus	ABC28834
Harvest35	U35_29522	169	3e-25	97 - 156	100	60 / 60	plus
Harvest35	U35_17513	1123	3e-25	1031 - 1090	100	60 / 60	plus

Contig Sequence (169 bp)

>U35_29522 169 Hv_44K_v2
GGCCGGAGTCGGGAGAGACGAGTGGCGTGAGTTGGTGTCTGTCGGTCAGTGCGTGTGCTC
CTGCAGTGAAATTTCTATCTTTACTCTTTCTTGCCACATTGATGTTGTTTAGTACTCCCT
CCGTTTTATAATATAAGGCCTTGTTTGGTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_29522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None