- Probe CUST_3532_PI390587928
- Source Contig U35_32470
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3532_PI390587928 | Hv_44K_v2 | AGTACTTGGCATTCAAGGAGCAGCTTGTTGACGAGCATGCCAGCAGCAAATTTGTGCTCG | 437 | GeneList: plum1 MasterList: Sucrose_synthase_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.293 | 0.234 | 0.890 | 1.577 | 1.798 | 1.846 |
| Raw | 106.506 | 101.292 | 452.602 | 1087.833 | 477.013 | 553.278 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248622.1 | 3217 | 2e-24 | 916 - 975 | 100 | 60 / 60 | plus | ABC00361 ABC00460 ABC00689 ABC00861 ABC04054 ABC04056 ABC37458 |
| MLOC | MLOC_11770.3 | 2806 | 3e-21 | 546 - 605 | 97 | 58 / 60 | plus | ABC00361 ABC00460 ABC00689 ABC00861 ABC37458 |
| MLOC | MLOC_11770.4 | 2828 | 3e-21 | 473 - 532 | 97 | 58 / 60 | plus | ABC00361 ABC00460 ABC00689 ABC00861 ABC37458 |
| MLOC | MLOC_11770.2 | 4062 | 3e-21 | 1802 - 1861 | 97 | 58 / 60 | plus | ABC00361 ABC00460 ABC00689 ABC00861 ABC37458 |
| MLOC | MLOC_11770.1 | 3004 | 3e-21 | 583 - 642 | 97 | 58 / 60 | plus | ABC00361 ABC00460 ABC00689 ABC00861 ABC29347 ABC37458 |
| JLOC1 | JLOC1_7835.2 | 3730 | 2e-21 | 1148 - 1207 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_7835.1 | 3174 | 2e-21 | 592 - 651 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00928 | 705 | 3e-25 | 365 - 424 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00890 | 706 | 2e-22 | 371 - 428 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC00460 | 2849 | 2e-22 | 377 - 434 | 98 | 57 / 58 | plus | ABC00460 |
| Harvest21 | ABC00361 | 683 | 2e-22 | 435 - 492 | 98 | 57 / 58 | plus | ABC00361 |
| Harvest21 | ABC00527 | 1306 | 6e-22 | 433 - 492 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_32470 | 497 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14485 | 512 | 3e-25 | 436 - 495 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14479 | 1896 | 2e-22 | 436 - 493 | 98 | 57 / 58 | plus |
Contig Sequence (497 bp)
>U35_32470 497 Hv_44K_v2 CCACACCCTATCACATTCATCACAGCCCCGTCATCTCCTCTGTCACACAAAGCCGTTGTT CCGTTCTCCCGTCCGGCGTGTCCGCGCTAGTTTTGTGTCCTGAGCCATGGCTGCCAAGCT GACCCGCCTCCACAGCCTCAGGGGGCGCCTTGGTGCCACCTTCTCCTCCCATCCCAGTGA GCTCATTGCACTCTTCTCCAGGTATGTTCACCAGGGCAAAGGCATGCTTCAGCGCCACCA GCTGCTCGCTGAGTTTGACGCCCTGTTCGAATCCGACAAGGAGAAGTATGCACCCTTTGA AGACATCCTCCGTGCTGCTCAGGAAGCAATTGTGCTTCCCCCATGGGCTGCACTTGCCAT CAGGCCCAGGCCTGGTGTCTGGGACTACATTCGGGTGAATGTTAGCGAGTTGGCTGTGGA AGAGCTGACTGTCTCTGAGTACTTGGCATTCAAGGAGCAGCTTGTTGACGAGCATGCCAG CAGCAAATTTGTGCTCG
Homology of Contig U35_32470 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g09450.8 | 804 | 5e-72 | protein|sucrose synthase, putative, expressed |
| Brachypodium v1_2 | Bradi1g46670.3 | 748 | 2e-76 | |
| Arabidopsis v10 | None |