barSeed - Barley Seed Development Database

Probe CUST_3531_PI390587928

Source Contig U35_32472

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3531_PI390587928	Hv_44K_v2	AAAGGGATCCGGGACAAGCTTCAAAAACCCCAATGCAATTGGACAGTCGATTGCTAAGAA	341	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5591.2	2227	2e-24	425 - 484	100	60 / 60	plus	ABC09377
MLOC	MLOC_5591.6	1395	2e-24	849 - 908	100	60 / 60	minus	ABC09377
MLOC	MLOC_5591.5	1689	2e-24	1142 - 1201	100	60 / 60	minus	ABC09377
MLOC	MLOC_5591.4	1873	2e-24	1342 - 1401	100	60 / 60	minus	ABC09377
MLOC	MLOC_5591.1	2309	2e-24	1778 - 1837	100	60 / 60	minus	ABC09377
MLOC	MLOC_5591.3	2255	2e-24	1731 - 1790	100	60 / 60	minus	ABC09377
JLOC1	JLOC1_3607.2	2573	8e-25	491 - 550	100	60 / 60	plus
JLOC1	JLOC1_3607.1	2545	8e-25	463 - 522	100	60 / 60	plus
Harvest21	ABC16408	787	3e-25	365 - 424	100	60 / 60	plus
Harvest35	U35_32472	424	3e-25	342 - 401	100	60 / 60	plus
Harvest35	U35_7055	802	3e-25	380 - 439	100	60 / 60	plus

Contig Sequence (424 bp)

>U35_32472 424 Hv_44K_v2
ACTCGCGGCCGCAGCAGCAACTGCAGTAGTGGCGGCGCCTACCCCCGCGATTCGCTAGGT
CATTGTAGAGCATCTCCCTTCACAAGGTTACCGAGGAGTGCCTGCTACGCGTCCACCACC
ATGGGAGACGAGACCTCCACTTCTGCCTCAGGCTCGGCCCAGGAACCTGCAGCACCGGCC
GTGCAGGGAGCCGGGAGTGTCAAGCAGCAGATCTCCAACTTGGTGGCTCTGTCACTCCAT
GCGACAGTGCCTGAAGTGGATGTAGAACCGATAGTTGAAGTTTGCACGGGAAAATTTGGT
GACTACCAGTGCAACAATGCAATGGGATTGTGGTCAAAAGTAAAGGGATCCGGGACAAGC
TTCAAAAACCCCAATGCAATTGGACAGTCGATTGCTAAGAACCTGCCTGCCTGTGACGTT
ATTG

Homology of Contig U35_32472 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g34680.1	662	2e-54
Arabidopsis v10	None