barSeed - Barley Seed Development Database

Probe CUST_35313_PI390587928

Source Contig U35_17551

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35313_PI390587928	Hv_44K_v2	ACTCTGTACCTTGTATTTCATCTGATAGCTGAGAAGGATCTAGAAGCTTCTGTTAAAAAA	1496	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64183.1	2715	3e-21	2661 - 2714	100	54 / 54	plus	ABC08153 ABC49770
JLOC1	JLOC1_42111.1	3032	2e-21	2767 - 2820	100	54 / 54	plus
Harvest35	U35_17551	1567	3e-25	1497 - 1556	100	60 / 60	plus

Contig Sequence (1567 bp)

>U35_17551 1567 Hv_44K_v2
GTCCCCCGGCTGCAGNAATTCGCACCGGGGTTGAACTATCAAAGGCGAACGGAAAGAATG
CATTGCACTTCGCTGCCCGTCAAGGGCATGTTGAAATAGTCAAGTCTTTGCTAGTCAGTG
AAGCTCAGCTTGCTCGGAAGACTGATAAGAAAGGACAGACCGCTTTGCATATGGCAGTTA
AAGGAACAAGTGCTGCCGTTGTTAGAGCACTCGTGAATGCTGATCCGGCCATAGTTATGC
TGCCTGATAAAAATGGCAACTTAGCTTTGCATGTTGCCACCAGGAAGAAAAGATCAGAGA
TTGTGAACGAGCTTCTGCTTCTTCCGGACATGAATGTGAATGCATTGACTAGGGATCGCA
AGACTGCATTCGACATAGCAGAGGGTCTTCCGTTATCAGAGGAGTCTGCGGATATAAAGG
ATTGTTTATCCCGTGCTGGTGCAGTGAGAGCAAATGATCTGAATCAGCCTCGGGATGAGC
TGAGAAAAACAGTGACTGAGATCAAGAAGGACGTACACACTCAACTTGAGCAAGCCAGAA
AAACTAACAAAAATGTTCATGGCATAGCAAAGGAGCTGAGGAAACTCCACAGGGAAGGCA
TCAACAATGCAACAAACTCTGTCACAGTTGTGGCTGTGCTCTTCGCCACAGTTGCATTTG
CTGCGATATTCACGGTGCCAGGTGGTAACGATGAGAAAGGTGTGGCAATCGTTGTGCATG
CGTTATCCTTCAAGGTGTTCTTCATCTTCAATGCCATCGCCTTGTTCACATCATTAGCAG
TAGTGGTGGTCCAGATAACACTTGTTAGGGGCGAGACGAAAGCAGAGAGGCGAGTTGTGG
AGGTTATCAACAAGTTGATGTGGCTGGCTTCGGTATGCACCACGGTGGCATTCATATCCT
CCTCTTACATAGTGGTGGGTCGGCACTTCAGGTGGGCGGCGCTTCTGGTGACCCTCATTG
GTGGGGTGATCATGGCTGGCGTGCTCGGTACGATGACATACTATGTGGTGAAGTCCAAGC
GCACACGTTCAATTAGGAAGAAGGTGAAATCAACAAGGCGGAGCGGCTCAAACTCATGGA
ACCACAACTCGGAGTCAGATTCCGAGATAGACCGGATATACGCCATATGAGGTGATCTCT
CCGGTCTATAGACCCTCGGTCTTTTTGGCGGCGCCACACGGCACGGATGTAAAAAGAATG
GCGGGATGGCACTCAGTATAAACAGCTTTGACCCTCCAGGTGCTGTGGGTATATGGGGTT
TTACCGTATACATTCCAATAAGCTGGTGTTCCTCTATGGGCAGGAGCCAGGAGCAGACGG
TACACGGTCGTGTTGTATACATCTTCTACAGATAGATTGTGATCATCAGAATATGCATGC
AGCCTGTGCTGTGCTCCCTATGCATGGCTGGCTGGCCTTCATAAAATTTCTCTCGGCCTT
CTTTTTTCTACCTTTTGTTAATATGCTGTGGTAGCAGAATGGTATGTGTACTTAGCACTC
TGTACCTTGTATTTCATCTGATAGCTGAGAAGGATCTAGAAGCTTCTGTTAAAAAAAAAA
AAAAAAA

Homology of Contig U35_17551 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17240.1	683	0.0	protein\|ankyrin repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi1g66220.1	686	0.0
Arabidopsis v10	AT3G12360.1	590	6e-172	\| Symbols: ITN1 \| Ankyrin repeat family protein \| chr3:3934146-3936495 FORWARD LENGTH=590