barSeed - Barley Seed Development Database

Probe CUST_3530_PI390587928

Source Contig U35_32473

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3530_PI390587928	Hv_44K_v2	AACAACATGGTGTGAGATCTGAGTATCTTGGCAGCACCCAAATGAGTAGCTCTGTTAGCA	383	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20390.3	3214	7e-23	2860 - 2919	98	59 / 60	minus	ABC20873
MLOC	MLOC_20390.4	3029	7e-23	2628 - 2687	98	59 / 60	minus	ABC20873
MLOC	MLOC_20390.6	1304	7e-23	902 - 961	98	59 / 60	minus	None
MLOC	MLOC_20390.5	3098	7e-23	2696 - 2755	98	59 / 60	minus	ABC20873
MLOC	MLOC_20390.2	3119	7e-23	2718 - 2777	98	59 / 60	minus	ABC20873
MLOC	MLOC_20390.1	3219	7e-23	2766 - 2825	98	59 / 60	minus	ABC20873
JLOC1	JLOC1_14124.2	1325	4e-23	326 - 385	98	59 / 60	plus
JLOC1	JLOC1_14124.1	3227	4e-23	385 - 444	98	59 / 60	plus
Harvest35	U35_32473	480	3e-25	384 - 443	100	60 / 60	plus

Contig Sequence (480 bp)

>U35_32473 480 Hv_44K_v2
TCGAGCACTGGTTGGCCTATTGGAAAAAAAAAAAAAAACCCCCACAATCGCCGCTCGCCA
CCACCCGTCCGTTCCATTCCAATCCCCTCGCCCCGCCCCCTTCCTTCCCCAATCCAACAC
GGCCCAATCTCCGCCCGGCGGAGCCCGACGCTCCGGCGCCGCAATGGAGGCGGCCCTGAA
GAGGTACTTCGGGTACACGGGGTTCCGGCCGTACCAGCGGGAGATCGTGGACACGATCAT
GCAGGGGCGGGACTGCCTCGTCGTCATGGCCACCGGCAGCGGCAAGTCCATGTGCTATCA
AATCCCTCCACTGGTTGCAAAGAAGACAGCTGTTGTTGTCAGCCCTCTTCTGTCACTGAT
GCAAGACCAGGTCATGAGTTTAAAACAACATGGTGTGAGATCTGAGTATCTTGGCAGCAC
CCAAATGAGTAGCTCTGTTAGCAGTGAGGCTGANAAGGCATGTATGATGTTCTGTACATG

Homology of Contig U35_32473 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g17580.1	895	4e-51
Arabidopsis v10	None