- Probe CUST_35306_PI390587928
- Source Contig U35_38681
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_35306_PI390587928 | Hv_44K_v2 | AGTCAAATCGGAGCATTGCTTCATGTCGACAGAAAATACTCCTTCCGTTCTTAAATACAG | 44 | GeneList: turquoise MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.480 | 1.389 | 1.216 | 1.028 | 0.481 | 0.248 |
Raw | 161.643 | 238.024 | 179.465 | 229.654 | 38.361 | 22.069 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC34568 | 448 | 3e-25 | 45 - 104 | 100 | 60 / 60 | minus | ABC34568 |
Harvest35 | U35_38681 | 448 | 3e-25 | 45 - 104 | 100 | 60 / 60 | minus |
Contig Sequence (448 bp)
>U35_38681 448 Hv_44K_v2 TTTTTTTTTTTTTTTTTAATAAATATATATTTATTTATTTTATTCTGTATTTAAGAACGG AAGGAGTATTTTCTGTCGACATGAAGCAATGCTCCGATTTGACTGTCCGCTTTGGAGTAC ATCCACGCAGATCCGGACAAAATGAAAAAAAAAGAGGCGGGGCAAACACAACTCTCGTGG GCTCTAGTGGTACAGTCGTACAGGCTACAGGCTACGTTCGGAGTCCGACGGGCTTCTACA GCCACAGGATGTGGTTCACGTCGACGCAGACCCGGACGACCCACCATCGGCGACGGCCGC CCTGCTCTGGAGCTCCCGGGCGCGCCCCCTCATCCCCTCCCCCTTCTCGCCCCGCATCAG CCGCCGGACGGCCGTTTCCACCGCTCCCCGCTCCAACACGCCGCCGTCCAGCGCGCTGCC CGCGCGCCACACGTGCTCCACGTGCCTC
Homology of Contig U35_38681 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |