- Probe CUST_352_PI390587928
- Source Contig U35_9375
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_352_PI390587928 | Hv_44K_v2 | TGAAGATCATGTTGTGGGCTTTACTGAACCCGCATCAGACAACTGTTGCCAGATTACATC | 506 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.269 | 1.055 | 1.058 | 1.176 | 0.507 | 0.479 |
| Raw | 111.505 | 130.819 | 128.348 | 226.960 | 34.208 | 34.762 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375166 | 1577 | 9e-22 | 591 - 652 | 97 | 60 / 62 | plus | None |
| MLOC | MLOC_11160.1 | 392 | 9e-22 | 251 - 312 | 97 | 60 / 62 | plus | None |
| JLOC1 | JLOC1_7365.1 | 394 | 5e-22 | 256 - 317 | 97 | 60 / 62 | plus | |
| Harvest35 | U35_9375 | 572 | 3e-25 | 507 - 566 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_35324 | 695 | 2e-22 | 134 - 195 | 97 | 60 / 62 | plus |
Contig Sequence (572 bp)
>U35_9375 572 Hv_44K_v2 CCGCCAGCCATGCTCCGCCTCGCCGCCGCGAGATCGCGGGCCCTCCTCCTGCCCCGGGCC GCCGCCGCCCTCGCCTCCACCGCCGCCCCATCCTCCTCCTCCTACTCCTCCTACGCCCGC GGCGCCCCCTCCTCCTCCTCCTACGCCTACCGCGCAGCCTCCTCCGCGGCGGCCGCTGCG GCGTCCGGCGCTGGCGGGGAGGCGGCCGCGGCCGCGGCGGCGCCGCCTCCTCCCGCGGCC CGCAAGGGGTGGGACAGGGGCCTGCTCAAGTTCGGCGTCTTCGCGGCCTTCGTCGGAGCC ATCGGCGGCGCCGGCTACGCCACCCACGCCTACTCGCTGGCTGAGGTTGACCAGAAGACC CTGGAGTTCAGGAAGGAGATGACCACCCCGATCCCCCTCGCACAGGACGCTTCAGAATTC GAGAAATTTCGGGCTAGGGCTTACGAAACCGCTAGGAAAGTTCCTGTGGCAGCGATAGAG CTTTACCTGGAAATTAGGAGCAGAATTGAAGATCATGTTGTGGGCTTTACTGAACCCGCA TCAGACAACTGTTGCCAGATTACATCCGCAGA
Homology of Contig U35_9375 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |