barSeed - Barley Seed Development Database

Probe CUST_35297_PI390587928

Source Contig U35_38693

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35297_PI390587928	Hv_44K_v2	ACCAGGCCCTTGATGGAATTATTGGGTTTGGCCAATCAAATACATCAATGCTATCACAGC	495	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.812	2.095	1.169	0.922	0.386	0.475
Raw	90.021	100.556	50.342	58.671	9.152	12.946

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71943.1	2137	2e-24	106 - 165	100	60 / 60	minus	None
JLOC1	JLOC1_47842.1	1304	8e-25	888 - 947	100	60 / 60	plus
Harvest21	ABC34585	555	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_38693	555	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (555 bp)

>U35_38693 555 Hv_44K_v2
GCGACGTCACCCGCCGGGGCCGTCTCCTCGACGCCGTCGACGTGCCCCTCGGTGGCCTTG
GCCTCCCCACCGACACCGGGCTCTACTATACGAAGATCGAGATCGGGACGCCGCCCAAGC
CATTCCACGTGCAGGTCGACACGGGCAGCGACATCCTCTGGGTCAATTGTATCTCCTGCG
ACAAATGCCCCCACAAGAGCGGCATCGGGATAGACCTGATGCTCTATGACCCCAAGGGAT
CATCTAGTGGGAGCACGGTATTTTGCGACCAAGGCTTCTGTGCGGCCACATACGGGGGCA
AGCTACCAGGGTGCACTGCCAGCTTGCCTTGCGAGTACAATGTCATGTATGGTGACGGTA
GCTCCACCACGGGCTACTTCGTCAATGACTCCCTGCAGTATAATCAAGTCTCTGGGGATG
GGCAAACAAGGCATGGCAGTGGCAGGGTCATATTCGGGTGTGGTGCACAGCAAGGTGGGG
ATTTAGGCAGTACTAACCAGGCCCTTGATGGAATTATTGGGTTTGGCCAATCAAATACAT
CAATGCTATCACAGC

Homology of Contig U35_38693 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g27360.2	471	1e-76	protein\|aspartic proteinase-like protein 2 precursor, putative, expressed
Brachypodium v1_2	Bradi3g42090.1	489	8e-99
Arabidopsis v10	AT1G05840.1	485	2e-60	Eukaryotic aspartyl protease family protein \| chr1:1762843-1766150 REVERSE LENGTH=485