barSeed - Barley Seed Development Database

Probe CUST_35293_PI390587928

Source Contig U35_38699

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35293_PI390587928	Hv_44K_v2	GTGCGCGCGCATCATATTGCTGTGATATTTGACGTACCGTATGGTCTGGTATTTAAAAAA	-1	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.326	1.228	1.127	0.902	0.318	0.259
Raw	1165.547	1666.785	1364.100	1738.256	211.278	189.849

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC34593	556	2e-22	13 - 74	97	60 / 62	minus	ABC34593
Harvest35	U35_38699	556	2e-22	13 - 74	97	60 / 62	minus

Contig Sequence (556 bp)

>U35_38699 556 Hv_44K_v2
TTTTTTTTTCTTTTTTTTAAATACCANGACCATNACGGTACGTCAAATATCACAGCAATA
TGATGCGCGCGCACACACACACAAACGGAGGCGGAAGTAGAAACTGAAACTTGGCAGCTT
AAAATTCAGATGTTTCGTTGACAAGAACTAAGATCCACAGGCTAAAAGACATTGCAAGTA
ACCAGCAGGATGCAAGTTTTCATGGCTGCCGTGACGATCTTGGAAGAATGGAGAGGGGCC
ATTTTAGGATGCCATTTTAGGATCTGGGCTTCTCCTTCTTTNCCTTGAAGAGGGCAAGGA
GGGACACGCCGGACACCTTCACCACCTTGAACCGGACACCGGGAATGTCTCCCACGGCAT
GCCCCTTCCGACCGAAACCGGCGATGAGCACCTCGTCATTTTCCTCGATGAAGTTCAGGC
AACCGTCGTTTGGCACAAAGGCGGCAATCTTCTTTCCATTCTTCACCAGCTGGACACGAG
CGCACTTACGGATGGCAGAGTTGGGCTGCTTGGCCTCAATGCCAATCTTTTCAAGGACAA
TCCCCTTTGCGTGGGA

Homology of Contig U35_38699 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60400.1	143	9e-63	protein\|40S ribosomal protein S23, putative, expressed
Brachypodium v1_2	Bradi2g54210.1	143	4e-63
Arabidopsis v10	AT5G02960.1	142	2e-62	Ribosomal protein S12/S23 family protein \| chr5:693280-694396 REVERSE LENGTH=142