- Probe CUST_35291_PI390587928
- Source Contig U35_9601
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35291_PI390587928 | Hv_44K_v2 | GAACGTCAAGCGTCAGGAGAAAGGAGAACCCTCATATGATAGTAATATATTTGAAGATCT | 485 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.534 | 0.520 | 1.145 | 1.436 | 0.948 | 1.054 |
| Raw | 45.428 | 64.885 | 133.017 | 259.626 | 60.006 | 74.421 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK360635 | 1763 | 2e-24 | 526 - 585 | 100 | 60 / 60 | plus | ABC15884 |
| MLOC | MLOC_64928.1 | 1900 | 2e-24 | 528 - 587 | 100 | 60 / 60 | plus | ABC15884 |
| MLOC | MLOC_64928.3 | 737 | 2e-24 | 543 - 602 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_64928.2 | 1461 | 2e-24 | 560 - 619 | 100 | 60 / 60 | plus | ABC15884 |
| MLOC | MLOC_64928.4 | 1426 | 2e-24 | 527 - 586 | 100 | 60 / 60 | plus | ABC15884 |
| JLOC1 | JLOC1_42673.2 | 1478 | 8e-25 | 589 - 648 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42673.1 | 1446 | 8e-25 | 557 - 616 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20934 | 548 | 3e-25 | 486 - 545 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_9601 | 548 | 3e-25 | 486 - 545 | 100 | 60 / 60 | plus |
Contig Sequence (548 bp)
>U35_9601 548 Hv_44K_v2 GCCGCCGCCGAGCCCTGGAGCTCCGTCCCGCCGTGTCGCCACTTAGCGTACGCCCCACCG GACCATCAGCAGGCGAGGGCCGGCCGGCGACCTACTTCAACGGAGCGTGGACGGAAGGTT TCTATATCTTCCATGGCGCTCGTGGTGATGTGCGGCCAGCCGTGCAGCGGCAAGTCAGAG GCTGCAGCTTGTCTTGCCGCCGCTCTTCGCTCCTCCGTGCCTGACGTCACTGTCCGCGTC ATTGATGAGTCATCGCTCCATCTTGGGCGCAATGAAAGCTACAAAGATATGGTCGTGGAG AAAAACTTAAGAGGAGTTCTGAGGTCAGAAGTTGACAGGTCTGTTTCACGGGATGGCATA ATCATCGTGGATTCTTTGAACAATATCAAGGGGTACCGGTACGAGCTGTGGTGTCTTGCG CGTGCTTCGGGAATAAGATATTGTGTGTTCTTTTGTGATACAGAAGTGGACCATTGTAGG GATTGGAACGTCAAGCGTCAGGAGAAAGGAGAACCCTCATATGATAGTAATATATTTGAA GATCTGGT
Homology of Contig U35_9601 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g03560.1 | 302 | 4e-83 | |
| Arabidopsis v10 | AT1G13870.1 | 302 | 6e-56 | | Symbols: DRL1, AtKTI12 | calmodulin binding;purine nucleotide binding | chr1:4747437-4748345 REVERSE LENGTH=302 |