barSeed - Barley Seed Development Database

Probe CUST_35290_PI390587928

Source Contig U35_9602

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35290_PI390587928	Hv_44K_v2	GCAAGGATCCATTTGGCTTATGTTCCTGGTTGTAATGTTTGTTTTTGTAATTTGTCTTCT	650	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.295	1.127	1.136	0.952	0.396	0.501
Raw	1386.407	1807.903	1715.797	2285.154	331.784	449.191

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64505.1	1184	2e-24	72 - 131	100	60 / 60	minus	None
MLOC	MLOC_64505.2	1175	2e-24	72 - 131	100	60 / 60	minus	None
JLOC1	JLOC1_42365.6	1075	8e-25	895 - 954	100	60 / 60	plus
JLOC1	JLOC1_42365.5	1143	8e-25	963 - 1022	100	60 / 60	plus
JLOC1	JLOC1_42365.4	1104	8e-25	924 - 983	100	60 / 60	plus
JLOC1	JLOC1_42365.3	1053	8e-25	873 - 932	100	60 / 60	plus
JLOC1	JLOC1_42365.2	1006	8e-25	826 - 885	100	60 / 60	plus
JLOC1	JLOC1_42365.1	1044	8e-25	864 - 923	100	60 / 60	plus
Harvest21	ABC43194	554	3e-25	91 - 150	100	60 / 60	minus
Harvest35	U35_9602	800	3e-25	651 - 710	100	60 / 60	plus

Contig Sequence (800 bp)

>U35_9602 800 Hv_44K_v2
GATCTGGCGGGGGGCACAGATCCACCTCCATCCGGTAGTGGACACAGATCCAACTCCATC
CAGCGGTGATTCAACATGAGCGAGGAGTCACCCAATCCCCACACGCTTCTCCTGGTCTAT
TTGTTTGTAGGTATTGTGTTATTATACACTTTATTATTTGGGTTGGGGGATCTGCAGGTC
AGTCTGGTGGGGATGGTCAGTGGCAAGGCGGAGCGGAACACAGATGTTTCCTTCACACTC
AACGATGACACCAGTCACATTGATTTCGTGAGATGATCACTGCCACAAGAATATTATGAA
TGTGCAATAGCAAGACAATTATGCCCTGTGTATATATACACACCCAACAGGTACAAAAGG
TTAAAATAAATACCCATCCTTGCAGCTCTCAAGAACCTTCATTGGAGCACTCAAGAACAG
AGAACACGGAAAATAAAATACGGGCCCTCTTGCACATTGAAAGCGCTGGACAATAGTGAT
TTATCCACTAATTGCTGCTGCTATGTTGTTGCATCACAGATCTGGATGACCATGTTCCCC
TATAATATTTGGAGCATGGGTTGTGGTGCACCTGAACAAGCATTACAATGTTGGAGCGGA
CGACCAGTCATGGCAGGGGGCGTTTGGTGCTTGTTTGTATTTTTTTTTTTGCAAGGATCC
ATTTGGCTTATGTTCCTGGTTGTAATGTTTGTTTTTGTAATTTGTCTTCTATTAGATATG
AGAAGAAATGTTAAAGAATACATTGTATCAAAATGTGTTGCGTAATCAAAATTAGTAGCC
TACTAAATTTGTAGCACAAA

Homology of Contig U35_9602 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None