barSeed - Barley Seed Development Database

Probe CUST_3528_PI390587928

Source Contig U35_32474

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3528_PI390587928	Hv_44K_v2	AAATGTTGATATGGACAAAATTGAATGTGAATCATGTGGTGCGCATCTTATATTCAGTGC	343	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55658.3	4453	2e-24	454 - 513	100	60 / 60	plus	ABC42998
MLOC	MLOC_55658.5	2192	2e-24	394 - 453	100	60 / 60	plus	None
MLOC	MLOC_55658.4	3426	2e-24	450 - 509	100	60 / 60	plus	ABC42998
MLOC	MLOC_55658.1	4193	2e-24	1248 - 1307	100	60 / 60	plus	ABC42998
MLOC	MLOC_55658.2	3804	2e-24	1220 - 1279	100	60 / 60	plus	ABC42998
JLOC1	JLOC1_35933.3	3129	8e-25	261 - 320	100	60 / 60	plus
JLOC1	JLOC1_35933.2	3329	8e-25	461 - 520	100	60 / 60	plus
JLOC1	JLOC1_35933.1	3365	8e-25	395 - 454	100	60 / 60	plus
Harvest35	U35_32474	403	3e-25	344 - 403	100	60 / 60	plus
Harvest35	U35_5852	554	2e-21	493 - 550	97	58 / 60	plus

Contig Sequence (403 bp)

>U35_32474 403 Hv_44K_v2
ATTTCCCCATTCCACCCCAGGAGAGGGAGGAGCGAGAGGCGCCCACCCCGGTGGCCAGTT
CTGCTGGTGCCTCATCACCTGCTATGCAAATTAATATAGTAAGCATAGATTGGCTGGGTA
ACAGACAGGCTTCCAGGGTTGATTCCTCATCACACGTTGCACCACATGCCTATGGGCCTG
CTCATAGCTTTGATGCTGCTGGAACTGCTTTGGATTCTGCACCATCTTGTAGACCATGGG
AGCGTGGAGACTTACTTCGTCGACTGGCAACATTCAAACCTTCAACTTGGGATGCTAAGC
CGAAGGCTGCTAGTTCATTGGCTTGTTCTCANAGAGGCTGGGTAAATGTTGATATGGACA
AAATTGAATGTGAATCATGTGGTGCGCATCTTATATTCAGTGC

Homology of Contig U35_32474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57160.1	944	9e-59	protein\|zinc ion binding protein, putative, expressed
Brachypodium v1_2	Bradi1g06480.1	958	9e-60
Arabidopsis v10	None