barSeed - Barley Seed Development Database

Probe CUST_35285_PI390587928

Source Contig U35_9609

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35285_PI390587928	Hv_44K_v2	GTGTCAGCTACTTCCTGGAGGACAACTGGCGCCGTTGCTGGGTGTTGTTACTCTGGTTCT	595	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55429.1	2930	2e-24	1974 - 2033	100	60 / 60	minus	ABC06354
MLOC	MLOC_55429.2	2562	2e-24	1919 - 1978	100	60 / 60	minus	ABC06354
MLOC	AK366247	3268	7e-23	1244 - 1303	98	59 / 60	plus	ABC06354
JLOC1	JLOC1_35755.1	4364	8e-25	914 - 973	100	60 / 60	plus
Harvest21	ABC20332	655	3e-25	596 - 655	100	60 / 60	plus
Harvest35	U35_9609	655	3e-25	596 - 655	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_9609 655 Hv_44K_v2
CACGCGCTCAAGGGGCTCAAGTTCATCAGCCGCACCGACGGCTCCGCCGGCTGGCCCGCC
GTCGAGAAGCGCTTCGACGACCTCGCCGAGAACGGCCTCCTCCACCGCTCCAAGTTCGGC
AAGTGCATCGGGATGAAGGAGCTGGCGTTCGCGGGCGAGCTGTTCGACGCGCTGGCGAGG
CGGAGGAACATCGCCGGGGACAGCATAAGCAAGGCGGAGCTGCTCGAGTTCTGGGACCAG
ATCTCCGACACCAGCTTCGACAGCCGCCTGCAGACCTTCTTCGACATGGTGGACAAGGAC
GCTGACGGCAGGATCACCGAGGAGGAGGTCAAAGAGATCATCACGCTGAGCGCGACGGCC
AACAACCTTACAAAGGTCAAGGACCAGTCTGAGGAGTACGCCCGGCTCATCATGGAGGAG
CTCGACCCCAACAACCTCGGCTACATCGAGCTGTACAACCTGGAGATGCTGCTGCTGCAG
GCGCCGAGCCAGTCCATGGCGATCGGAACGACCAACAGCCGCAACCTGAGCCAGATGCTG
AGTCAGCACCTCCGGCCGACGGCGGAGCCCAACCCGCTCCGGCGGTGGTACCGCCGTGTC
AGCTACTTCCTGGAGGACAACTGGCGCCGTTGCTGGGTGTTGTTACTCTGGTTCT

Homology of Contig U35_9609 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g33120.2	729	8e-134	protein\|respiratory burst oxidase, putative, expressed
Brachypodium v1_2	Bradi4g17020.1	925	7e-138
Arabidopsis v10	AT5G51060.1	905	8e-92	\| Symbols: RHD2, ATRBOHC, RBOHC \| NADPH/respiratory burst oxidase protein D \| chr5:20757484-20762175 REVERSE LENGTH=905