- Probe CUST_35284_PI390587928
- Source Contig U35_9610
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35284_PI390587928 | Hv_44K_v2 | ATATCCAGTGCATTTGCTGGGATGAATTTCCAAGATGTGGGTGCTGATCCTACTGCTGAT | 182 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.349 | 1.155 | 1.567 | 0.953 | 0.415 | 0.370 |
| Raw | 22.654 | 31.926 | 35.833 | 35.970 | 4.098 | 3.698 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_3948.1 | 1465 | 2e-24 | 795 - 854 | 100 | 60 / 60 | plus | ABC43486 |
| MLOC | MLOC_3948.2 | 1446 | 2e-24 | 630 - 689 | 100 | 60 / 60 | plus | ABC43486 |
| JLOC1 | JLOC1_2387.1 | 1543 | 8e-25 | 720 - 779 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20591 | 558 | 3e-25 | 183 - 242 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_9610 | 559 | 3e-25 | 183 - 242 | 100 | 60 / 60 | plus |
Contig Sequence (559 bp)
>U35_9610 559 Hv_44K_v2 GTCCAAGATACCAAGCCAACAACAATATGTCCAAAGGTGAAATTTCTCTTTCTGAACTTG TTCGTTTCTTTCCAGTTTCCACCACATTGAATGAATTCCAGAAACAACTGCTGATCGGCG GCGAACAATGTCGCAATCCTGCAGATTGTGGCGGCTCTTCAGTGGATTCCTCAATGGACG ACATATCCAGTGCATTTGCTGGGATGAATTTCCAAGATGTGGGTGCTGATCCTACTGCTG ATGGGGCGGCAACCAGCCAGGGGAACAGGTTGACCATGTCCAGGAGAAGAACACCTAGAG GCGGGGAGCGAATCCGGGCATTCAACCCCAGGGCCCCAAACTTTCTTCCAGTGGTGCCTG ATCCGGATGCTGAAAAGGTTGATCTCAGGCATCAGATGGCCGATGATCGCAAGAATGCCG AGGAGTGGATGGTTGACTATGCGCTTANGAGGACAGTGAACAAGCTGGCCCGTGCTCAGA AGAGGAAGGTGGAGATGCTTGTCCAGGCCTTTGAAACTGTTCTACCGCCACCGCCAGTCC CAGGTGAGAAAAACTACCT
Homology of Contig U35_9610 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |